RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PRPF6O94906 941 aaKnown RBP11.84□□□□□ -0.51
RTN3-204ENST00000354497 RTN3O95197 1032 aaPredicted RBP11.84□□□□□ -0.51
RTN3-204ENST00000354497 GCNT3O95395 438 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 ACADMP11310 421 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 GNL1P36915 607 aaPredicted RBP11.84□□□□□ -0.51
RTN3-204ENST00000354497 CSNK1EP49674 416 aaKnown RBP11.84□□□□□ -0.51
RTN3-204ENST00000354497 CLDN6P56747 220 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 IL9RQ01113 521 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 FUT11Q495W5 492 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 ZNF843Q8N446 348 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 CADM4Q8NFZ8 388 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 OR5B17Q8NGF7 314 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 NXPE2Q96DL1 559 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 AK8Q96MA6 479 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 ELOVL4Q9GZR5 314 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 DPEP3Q9H4B8 488 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 PRORYQ9H606 182 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 GMIPQ9P107 970 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 AK5Q9Y6K8 562 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 STON1Q9Y6Q2 735 aa11.84□□□□□ -0.51
RTN3-204ENST00000354497 APC2O95996 2303 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 METTL12A8MUP2 240 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 J3QKU1 62 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 KCNK3O14649 394 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 RRP8O43159 456 aaKnown RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 SLC26A4O43511 780 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 SYNCRIPO60506 623 aaKnown RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 HOXB1P14653 301 aaPredicted RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 PTPN1P18031 435 aaKnown RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 OXTRP30559 389 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 EIF2S3P41091 472 aaKnown RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 SMAD1Q15797 465 aaKnown RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 KIF19Q2TAC6 998 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 C6orf118Q5T5N4 469 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 OVCA2Q8WZ82 227 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 PRCCQ92733 491 aaPredicted RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 MARVELD3Q96A59 401 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 SIPA1Q96FS4 1042 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 CBWD1Q9BRT8 395 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 TMEM30AQ9NV96 361 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 INTS13Q9NVM9 706 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 PLK2Q9NYY3 685 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 WDR35Q9P2L0 1181 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 FTSJ1Q9UET6 329 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 LSM7Q9UK45 103 aaKnown RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 SNX11Q9Y5W9 270 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 MYOFQ9NZM1 2061 aa11.83□□□□□ -0.52
RTN3-204ENST00000354497 HELZ2Q9BYK8 2649 aaKnown RBP11.83□□□□□ -0.52
RTN3-204ENST00000354497 ATP8B3O60423 1300 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 PTPRJQ12913 1337 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 A8MXQ7 604 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 GFRA2O00451 464 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 CACNG3O60359 315 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 DKK1O94907 266 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 JUPP14923 745 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 GARTP22102 1010 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 GRK6P43250 576 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 TPMTP51580 245 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 GTF2A1P52655 376 aaPredicted RBP11.82□□□□□ -0.52
RTN3-204ENST00000354497 TNNC1P63316 161 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 CFHR1Q03591 330 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 SF3A1Q15459 793 aaKnown RBP11.82□□□□□ -0.52
RTN3-204ENST00000354497 TEAD4Q15561 434 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 ARL6IP4Q66PJ3 421 aaKnown RBP11.82□□□□□ -0.52
RTN3-204ENST00000354497 GPD1LQ8N335 351 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 SCAMP5Q8TAC9 235 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 KCNK16Q96T55 309 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 B3GNT5Q9BYG0 378 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 MKRN2Q9H000 416 aaKnown RBP11.82□□□□□ -0.52
RTN3-204ENST00000354497 ITM2CQ9NQX7 267 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.82□□□□□ -0.521e-6■■■■■ 88.9
RTN3-204ENST00000354497 USP36Q9P275 1121 aaKnown RBP11.82□□□□□ -0.52
RTN3-204ENST00000354497 NFE2L3Q9Y4A8 694 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 NME7Q9Y5B8 376 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 BPTFQ12830 3046 aa11.82□□□□□ -0.52
RTN3-204ENST00000354497 E9PAM4 449 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 TLX3O43711 291 aaPredicted RBP11.81□□□□□ -0.52
RTN3-204ENST00000354497 TPM3P06753 285 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 HNF1BP35680 557 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 IL12RB1P42701 662 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 CCT8P50990 548 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 AFF3P51826 1226 aaKnown RBP11.81□□□□□ -0.52
RTN3-204ENST00000354497 SLC5A3P53794 718 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 CDH8P55286 799 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 GOLGA8FQ08AF8 430 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 GOLGA8DPQ0D2H9 430 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 DUOXA2Q1HG44 320 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 INAVAQ3KP66 663 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 SWT1Q5T5J6 900 aaKnown RBP11.81□□□□□ -0.52
RTN3-204ENST00000354497 LAYNQ6UX15 382 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 LIMS2Q7Z4I7 341 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 METTL3Q86U44 580 aaKnown RBP11.81□□□□□ -0.52
RTN3-204ENST00000354497 TMPRSS6Q8IU80 811 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 BAP1Q92560 729 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 ZSCAN31Q96LW9 406 aaPredicted RBP11.81□□□□□ -0.52
RTN3-204ENST00000354497 NUP58Q9BVL2 599 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 RASSF4Q9H2L5 321 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 ACACAQ13085 2346 aa11.81□□□□□ -0.52
RTN3-204ENST00000354497 H3BQV1 296 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 PYCARD-AS1I3L0S3 204 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms