RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CETN1Q12798 172 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 PLA2G2CQ5R387 149 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 EGFLAMQ63HQ2 1017 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 TCEAL6Q6IPX3 200 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 TOGARAM2Q6ZUX3 1019 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 UBR7Q8N806 425 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 TCEAL3Q969E4 200 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 ERLEC1Q96DZ1 483 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 SPACA7Q96KW9 195 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 IPO9Q96P70 1041 aaKnown RBP20.47■□□□□ 0.87
LIME1-201ENST00000309546 RXFP3Q9NSD7 469 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 O00370 1275 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 DHPSP49366 369 aaPredicted RBP20.46■□□□□ 0.87
LIME1-201ENST00000309546 PAK1Q13153 545 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 IL31Q6EBC2 164 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 DENND1CQ8IV53 801 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 CHPFQ8IZ52 775 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 SIX6OS1Q8N1H7 587 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 KCNV2Q8TDN2 545 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 KAT5Q92993 513 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 DCLK3Q9C098 648 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 ZNF510Q9Y2H8 683 aa20.46■□□□□ 0.87
LIME1-201ENST00000309546 PLXND1Q9Y4D7 1925 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 BCLAF3A2AJT9 711 aaKnown RBP20.45■□□□□ 0.86
LIME1-201ENST00000309546 PRRT4C9JH25 899 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 MAP3K13O43283 966 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 CAVIN2O95810 425 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 NTSR1P30989 418 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 CYP2U1Q7Z449 544 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 FRMD1Q8N878 549 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 OLIG1Q8TAK6 271 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 ACOX2Q99424 681 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 AGO1Q9UL18 857 aaKnown RBP20.45■□□□□ 0.86
LIME1-201ENST00000309546 HCN2Q9UL51 889 aa20.45■□□□□ 0.86
LIME1-201ENST00000309546 M0QYV0 167 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 PAEPP09466 180 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 SETSIPP0DME0 302 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 LCP1P13796 627 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 BRD2P25440 801 aaKnown RBP20.44■□□□□ 0.86
LIME1-201ENST00000309546 CHKAP35790 457 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 P2RY2P41231 377 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 RGS7P49802 495 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 PPM1JQ5JR12 505 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 PM20D1Q6GTS8 502 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 SDE2Q6IQ49 451 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 ARMCX6Q7L4S7 300 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 RRAGAQ7L523 313 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 BHLHA9Q7RTU4 235 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 RNF139Q8WU17 664 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 TFAP2BQ92481 460 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 EDEM1Q92611 657 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 P2RY11Q96G91 374 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 OLA1Q9NTK5 396 aaKnown RBP20.44■□□□□ 0.86
LIME1-201ENST00000309546 KIAA1257Q9ULG3 409 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 STARD13Q9Y3M8 1113 aa20.44■□□□□ 0.86
LIME1-201ENST00000309546 CEP192Q8TEP8 1941 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 PIK3R2O00459 728 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 PMM2O15305 246 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 P4HA2O15460 535 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 CALCAP01258 141 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 CISD3P0C7P0 127 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 KCNH2Q12809 1159 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 STPG1Q5TH74 334 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 LPCAT2Q7L5N7 544 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 FMNL3Q8IVF7 1028 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 ARHGEF19Q8IW93 802 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 RBBP8NLQ8NC74 664 aaPredicted RBP20.43■□□□□ 0.86
LIME1-201ENST00000309546 PLD4Q96BZ4 506 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 EDEM2Q9BV94 578 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 SRRTQ9BXP5 876 aaKnown RBP20.43■□□□□ 0.86
LIME1-201ENST00000309546 SFMBT1Q9UHJ3 866 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 RAD54BQ9Y620 910 aa20.43■□□□□ 0.86
LIME1-201ENST00000309546 TNRC6BQ9UPQ9 1833 aaKnown RBP20.43■□□□□ 0.86
LIME1-201ENST00000309546 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 YJEFN3A6XGL0 299 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 E7ENQ6 273 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 RNF225M0QZC1 329 aaPredicted RBP20.42■□□□□ 0.86
LIME1-201ENST00000309546 ZBTB24O43167 697 aaPredicted RBP20.42■□□□□ 0.86
LIME1-201ENST00000309546 GNA14O95837 355 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 PENKP01210 267 aaPredicted RBP20.42■□□□□ 0.86
LIME1-201ENST00000309546 AFPP02771 609 aaKnown RBP20.42■□□□□ 0.86
LIME1-201ENST00000309546 CYBBP04839 570 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 GABRG2P18507 467 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 LIMK1P53667 647 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 BYSLQ13895 437 aaKnown RBP20.42■□□□□ 0.86
LIME1-201ENST00000309546 FYB2Q5VWT5 728 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 BSPRYQ5W0U4 402 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 RNF43Q68DV7 783 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 FOXR2Q6PJQ5 311 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 LCLAT1Q6UWP7 414 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 TRIM59Q8IWR1 403 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 TMEFF1Q8IYR6 380 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 LMO3Q8TAP4 145 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 KCTD13Q8WZ19 329 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 PIGKQ92643 395 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 CACNA2D2Q9NY47 1150 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 CALCOCO1Q9P1Z2 691 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 MBD1Q9UIS9 605 aaPredicted RBP20.42■□□□□ 0.86
LIME1-201ENST00000309546 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.42■□□□□ 0.86
LIME1-201ENST00000309546 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms