RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CACNB2Q08289 660 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 KIAA0408Q6ZU52 694 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 IZUMO1Q8IYV9 350 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 RNF149Q8NC42 400 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 TMEM143Q96AN5 459 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 RABGEF1Q9UJ41 708 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 FAM153BP0C7A2 387 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 ACOT2P49753 483 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 CNTN1Q12860 1018 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 TSC22D1Q15714 1073 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 FAM153CQ494X1 144 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 KCTD21Q4G0X4 260 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 KCNT1Q5JUK3 1230 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 SCFD2Q8WU76 684 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 MTMR9Q96QG7 549 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 ZNF70Q9UC06 446 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 SF3B1O75533 1304 aaKnown RBP eCLIP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 KLRC4O43908 158 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 PARNO95453 639 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 KCNMA1Q12791 1236 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 TTMPQ5BVD1 217 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 SEL1L3Q68CR1 1132 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 CYP4Z1Q86W10 505 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 ATXN2LQ8WWM7 1075 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 KIF12Q96FN5 646 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 UBE2OQ9C0C9 1292 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 CDC42EP4Q9H3Q1 356 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 RASA2Q15283 850 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 TFDP3Q5H9I0 405 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 LINC00523Q86TU6 105 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 EPHX4Q8IUS5 362 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 RNF112Q9ULX5 631 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 AFF2P51816 1311 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 MEI4A8MW99 385 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 TRAPPC3O43617 180 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 POU1F1P28069 291 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 PPIDQ08752 370 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 PTRHD1Q6GMV3 140 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 WDR59Q6PJI9 974 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 DDX53Q86TM3 631 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 TMC2Q8TDI7 906 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 PIGUQ9H490 435 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 PNMA8CA0A1B0GUJ8 204 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 DPYSL4O14531 572 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 GRAP2O75791 330 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PTPN7P35236 360 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 KCNJ1P48048 391 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CASP4P49662 377 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 DPY19L2Q6NUT2 758 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CDC73Q6P1J9 531 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 LRRC74BQ6ZQY2 392 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CROCCP3Q8IVE0 287 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PRCCQ92733 491 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 ZNF184Q99676 751 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 WWOXQ9NZC7 414 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 GGA2Q9UJY4 613 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 TM9SF1O15321 606 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 SGPL1O95470 568 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CYP24A1Q07973 514 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 LGALS3BPQ08380 585 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 EFHC1Q5JVL4 640 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PGM2Q96G03 612 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 ENTPD7Q9NQZ7 604 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 IARS2Q9NSE4 1012 aaKnown RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 NMRK1Q9NWW6 199 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 EIF3LQ9Y262 564 aaKnown RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 MAPK1P28482 360 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 STAT5BP51692 787 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 UNC45BQ8IWX7 931 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 HS6ST3Q8IZP7 471 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CYP4Z2PQ8N1L4 340 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 KYQ8NBH2 561 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 HDAC7Q8WUI4 952 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 FAM151AQ8WW52 585 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 SLC35C1Q96A29 364 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PABPC5Q96DU9 382 aaKnown RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 EFCAB1Q9HAE3 211 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 HMG20AQ9NP66 347 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PIM2Q9P1W9 311 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 TFRCP02786 760 aaKnown RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 THRAP10827 490 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 MCL1Q07820 350 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PGS1Q32NB8 556 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 NT5DC3Q86UY8 548 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CACTIN-AS1Q8N1I8 211 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 RMND5AQ9H871 391 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 C15orf41Q9Y2V0 281 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 FAM20BO75063 409 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 GARTP22102 1010 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 GRIK1P39086 918 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 GPAT2Q6NUI2 795 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 VMP1Q96GC9 406 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 MUC3BQ9H195 1237 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 EEF2KO00418 725 aaKnown RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 NR3C2P08235 984 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 FGRP09769 529 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 SLC12A3P55017 1021 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 RBP5P82980 135 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 IL17AQ16552 155 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms