RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 CDK7P50613 346 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 PRKAA1Q13131 559 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 TP53BP2Q13625 1128 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 NFIL3Q16649 462 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 SCARA3Q6AZY7 606 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 TMEM86AQ8N2M4 240 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 ZCCHC9Q8N567 271 aaKnown RBP13.15□□□□□ -0.3
PTCD1-201ENST00000292478 SLC7A5P2Q9GIP4 190 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 NINJ2Q9NZG7 142 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 PCDHB5Q9Y5E4 795 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 KRT8P05787 483 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 FCGR1AP12314 374 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 TSHRP16473 764 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 IRX1P78414 480 aaPredicted RBP13.15□□□□□ -0.3
PTCD1-201ENST00000292478 PLOD1Q02809 727 aaPredicted RBP13.15□□□□□ -0.3
PTCD1-201ENST00000292478 LRRC74AQ0VAA2 488 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 TRMT5Q32P41 509 aaKnown RBP13.15□□□□□ -0.3
PTCD1-201ENST00000292478 WASHC2DQ5SRD0 308 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 UNC93AQ86WB7 457 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 MIB1Q86YT6 1006 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 P3H2Q8IVL5 708 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 PLEKHA8Q96JA3 519 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 GPAMQ9HCL2 828 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.15□□□□□ -0.3
PTCD1-201ENST00000292478 SUFUQ9UMX1 484 aa13.15□□□□□ -0.3
PTCD1-201ENST00000292478 SRRM3A6NNA2 597 aaPredicted RBP13.15□□□□□ -0.31
PTCD1-201ENST00000292478 KLRC4O43908 158 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 SOX10P56693 466 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 HPCAP84074 193 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 DAB2P98082 770 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 ZNF844Q08AG5 666 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 EFEMP1Q12805 493 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 IQSEC1Q6DN90 963 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 SLC30A9Q6PML9 568 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 LAYNQ6UX15 382 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 ITIH5Q86UX2 942 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 GPC2Q8N158 579 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 TDRD5Q8NAT2 981 aaKnown RBP13.15□□□□□ -0.31
PTCD1-201ENST00000292478 SERPINB11Q96P15 392 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 SLC24A3Q9HC58 644 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 SETD4Q9NVD3 440 aa13.15□□□□□ -0.31
PTCD1-201ENST00000292478 H2AFY2Q9P0M6 372 aaPredicted RBP13.15□□□□□ -0.31
PTCD1-201ENST00000292478 NCANO14594 1321 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 LACTBL1A8MY62 500 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 CYP1A2P05177 515 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 HLA-DPA1P20036 260 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 PAX3P23760 479 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 MZF1P28698 734 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 ELK3P41970 407 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 CD151P48509 253 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 SGO1Q5FBB7 561 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 MARC1Q5VT66 337 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 NR1H4Q96RI1 486 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 IL1RL2Q9HB29 575 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 UBIAD1Q9Y5Z9 338 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 MROH7Q68CQ1 1323 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 URODP06132 367 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 ALADP13716 330 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 EPHB3P54753 998 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 PDPK2PQ6A1A2 396 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 OVOS1Q6IE37 1185 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 KCNK18Q7Z418 384 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 ELOVL4Q9GZR5 314 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 MANSC4A6NHS7 340 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 EIF4E1BA6NMX2 242 aaKnown RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 SKAP2O75563 359 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 USP1O94782 785 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 BGNP21810 368 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 CSTF3Q12996 717 aaKnown RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 CBWD6Q4V339 395 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 CBWD3Q5JTY5 395 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 CBWD5Q5RIA9 395 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 MTDHQ86UE4 582 aaKnown RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 RIOX2Q8IUF8 465 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 SOCS4Q8WXH5 440 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 UMODL1Q5DID0 1318 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 ADGRA3Q8IWK6 1321 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 CASZ1Q86V15 1759 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 PDHXO00330 501 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 FGRP09769 529 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 ZNF286BP0CG31 522 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 SERPINB5P36952 375 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 MFSD10Q14728 455 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 PRMT9Q6P2P2 845 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 TTC33Q6PID6 262 aaPredicted RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 MFSD7Q6UXD7 560 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 VSIG10LQ86VR7 867 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 SPATA17Q96L03 361 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 THUMPD3Q9BV44 507 aaKnown RBP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 DNAJC18Q9H819 358 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 THAP1Q9NVV9 213 aa13.14□□□□□ -0.31
PTCD1-201ENST00000292478 RBM22Q9NW64 420 aaKnown RBP eCLIP13.14□□□□□ -0.31
PTCD1-201ENST00000292478 RTN3O95197 1032 aaPredicted RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ALDH2P05091 517 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 RHOAP61586 193 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 CHRNB3Q05901 458 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 CNTN1Q12860 1018 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 PLD1Q13393 1074 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 MSL3Q8N5Y2 521 aaKnown RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 TERB1Q8NA31 727 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms