RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 DDX20Q9UHI6 824 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 USP18Q9UMW8 372 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 HOXA2O43364 376 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 NPTXRO95502 500 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PDGFRBP09619 1106 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 HSMCR30P0CW71 290 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 MYL12AP19105 171 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 OXCT1P55809 520 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 KYAT3Q6YP21 454 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 DHFR2Q86XF0 187 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 TMC2Q8TDI7 906 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PDE4DIPQ5VU43 2346 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 SRRM3A6NNA2 597 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 DNALI1O14645 258 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 BIRC5O15392 142 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 SERPINH1P50454 418 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 OTUD4Q01804 1114 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 MSLNQ13421 630 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 TMEM132CQ8N3T6 1108 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PACSIN1Q9BY11 444 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 ELOVL6Q9H5J4 265 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 RUVBL2Q9Y230 463 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PCDHB7Q9Y5E2 793 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 E2F8A0AVK6 867 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 FYNP06241 537 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 MSH3P20585 1137 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 SPANXN3Q5MJ09 141 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 CCDC149Q6ZUS6 474 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 ARHGAP22Q7Z5H3 698 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PIGUQ9H490 435 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 NMRAL1Q9HBL8 299 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 KLHL28Q9NXS3 571 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 FAM25AB3EWG3 89 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 FAM25CB3EWG5 89 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 FAM25GB3EWG6 89 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 TOP3AQ13472 1001 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 LAYNQ6UX15 382 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 RBM43Q6ZSC3 357 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 DUSP12Q9UNI6 340 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 DNAJC16Q9Y2G8 782 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 ACOT9Q9Y305 439 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PTPRUQ92729 1446 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 FAM20BO75063 409 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 VAC14Q08AM6 782 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 BLOC1S5Q8TDH9 187 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 L3MBTL3Q96JM7 780 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 QKIQ96PU8 341 aaKnown RBP eCLIP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 NLNQ9BYT8 704 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 C6orf62Q9GZU0 229 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 LNPEPQ9UIQ6 1025 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 VAV3Q9UKW4 847 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 C15orf41Q9Y2V0 281 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 IPPQ9Y573 584 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 A0A087X1B8 175 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 F8VZ95 297 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 GLP2RO95838 553 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 ICAM1P05362 532 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 KLRC1P26715 233 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 AVPR1AP37288 418 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 HK2P52789 917 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 SLC34A1Q06495 639 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 SEPT12Q8IYM1 358 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 MIER2Q8N344 545 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 IRX2Q9BZI1 471 aaPredicted RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 CORO2BQ9UQ03 480 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 HACD1B0YJ81 288 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 C21orf2O43822 256 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 TRAF2Q12933 501 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 RNFT2Q96EX2 444 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 OTUD5Q96G74 571 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 RUSC1Q9BVN2 902 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 THAP2Q9H0W7 228 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 PMPCBO75439 489 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 STX11O75558 287 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 EIF2B2P49770 351 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 FRG1Q14331 258 aaKnown RBP8.19□□□□□ -1.1
LIMD1-201ENST00000273317 WDR49Q8IV35 697 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 ZBTB10Q96DT7 871 aa8.19□□□□□ -1.1
LIMD1-201ENST00000273317 RNASEH1O60930 286 aaKnown RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 HOXC6P09630 235 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 MAPTP10636 758 aaKnown RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 FEN1P39748 380 aaKnown RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 NAMPTP43490 491 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 GSTA3Q16772 222 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 IRGCQ6NXR0 463 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 LRRC74BQ6ZQY2 392 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 EIF1ADQ8N9N8 165 aaKnown RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 RORBQ92753 470 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 FAM120BQ96EK7 910 aaKnown RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 SORCS3Q9UPU3 1222 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 ECDO95905 644 aaPredicted RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 LDLRP01130 860 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 CPA3P15088 417 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 DEFB107AQ8IZN7 70 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 OR6Y1Q8NGX8 325 aa8.18□□□□□ -1.1
LIMD1-201ENST00000273317 MAGEB10Q96LZ2 347 aaPredicted RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 KLF6Q99612 283 aaPredicted RBP8.18□□□□□ -1.1
LIMD1-201ENST00000273317 ADPRHL2Q9NX46 363 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms