RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 DQX1Q8TE96 717 aaKnown RBP14.67□□□□□ -0.06
SS18-201ENST00000269137 CASKIN2Q8WXE0 1202 aa14.67□□□□□ -0.06
SS18-201ENST00000269137 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.67□□□□□ -0.066e-8■■■■□ 26.7
SS18-201ENST00000269137 NKD2Q969F2 451 aaPredicted RBP14.67□□□□□ -0.06
SS18-201ENST00000269137 SEPT5Q99719 369 aaPredicted RBP14.67□□□□□ -0.06
SS18-201ENST00000269137 PLEKHA4Q9H4M7 779 aa14.67□□□□□ -0.06
SS18-201ENST00000269137 DHX35Q9H5Z1 703 aaKnown RBP14.67□□□□□ -0.06
SS18-201ENST00000269137 FAM204AQ9H8W3 233 aa14.67□□□□□ -0.06
SS18-201ENST00000269137 PRDM16Q9HAZ2 1276 aa14.67□□□□□ -0.06
SS18-201ENST00000269137 DDIT4Q9NX09 232 aa14.67□□□□□ -0.06
SS18-201ENST00000269137 RCOR3Q9P2K3 495 aaPredicted RBP14.67□□□□□ -0.06
SS18-201ENST00000269137 FBXW11Q9UKB1 542 aa14.67□□□□□ -0.06
SS18-201ENST00000269137 DRG1Q9Y295 367 aaKnown RBP14.67□□□□□ -0.06
SS18-201ENST00000269137 APOC4-APOC2K7ER74 178 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 APOC2P02655 101 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 ADRA1BP35368 520 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 PSEN1P49768 467 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 USP46P62068 366 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 LMNB2Q03252 620 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 IFRD2Q12894 506 aaPredicted RBP14.66□□□□□ -0.06
SS18-201ENST00000269137 MMRN1Q13201 1228 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SNX1Q13596 522 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 RAB33AQ14088 237 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 ANKRD20A8PQ5CZ79 823 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SND1Q7KZF4 910 aaKnown RBP eCLIP14.66□□□□□ -0.06
SS18-201ENST00000269137 TAC4Q86UU9 113 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SLC35B2Q8TB61 432 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SMOC2Q9H3U7 446 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 NMUR1Q9HB89 426 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.66□□□□□ -0.06
SS18-201ENST00000269137 FNIP2Q9P278 1114 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 MAFFQ9ULX9 164 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 MYO16Q9Y6X6 1858 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 A0A1W2PQH9 124 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 ESYT3A0FGR9 886 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 LILRB3O75022 631 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SOAT2O75908 522 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 FGF18O76093 207 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 MYBL2P10244 700 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 ATF2P15336 505 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 GBP1P32455 592 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 CARSP49589 748 aaKnown RBP14.66□□□□□ -0.06
SS18-201ENST00000269137 PGFP49763 221 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 CREMQ03060 361 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 BYSLQ13895 437 aaKnown RBP14.66□□□□□ -0.06
SS18-201ENST00000269137 EFHC2Q5JST6 749 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SLC9A4Q6AI14 798 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 MSANTD2Q6P1R3 559 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 PQLC3Q8N755 202 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 PCDH19Q8TAB3 1148 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 ADAM32Q8TC27 787 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 AENQ8WTP8 325 aaKnown RBP14.66□□□□□ -0.06
SS18-201ENST00000269137 KCTD15Q96SI1 283 aaPredicted RBP14.66□□□□□ -0.06
SS18-201ENST00000269137 TRIM51Q9BSJ1 452 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 TTLL2Q9BWV7 592 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 MTIF3Q9H2K0 278 aaKnown RBP14.66□□□□□ -0.06
SS18-201ENST00000269137 RXFP1Q9HBX9 757 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 MRPL17Q9NRX2 175 aaKnown RBP14.66□□□□□ -0.06
SS18-201ENST00000269137 FAM114A2Q9NRY5 505 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 CLIC5Q9NZA1 410 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.66□□□□□ -0.06
SS18-201ENST00000269137 DNPEPQ9ULA0 475 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SSX2IPQ9Y2D8 614 aa14.66□□□□□ -0.06
SS18-201ENST00000269137 SYNJ2BP-COX16A0A087WUM0 186 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 GAS8O95995 478 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 ATP2A2P16615 1042 aaKnown RBP14.65□□□□□ -0.06
SS18-201ENST00000269137 SYN1P17600 705 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 ATF6P18850 670 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 VCPP55072 806 aaKnown RBP14.65□□□□□ -0.06
SS18-201ENST00000269137 TRADDQ15628 312 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 OASLQ15646 514 aaKnown RBP14.65□□□□□ -0.06
SS18-201ENST00000269137 ARL13BQ3SXY8 428 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 PPP6R3Q5H9R7 873 aaPredicted RBP14.65□□□□□ -0.06
SS18-201ENST00000269137 RASIP1Q5U651 963 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 ACTL9Q8TC94 416 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.65□□□□□ -0.06
SS18-201ENST00000269137 LBHD1Q9BQE6 289 aaPredicted RBP14.65□□□□□ -0.06
SS18-201ENST00000269137 ZBP1Q9H171 429 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 ZNF446Q9NWS9 450 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 COX16Q9P0S2 106 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 GMIPQ9P107 970 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 NEU2Q9Y3R4 380 aa14.65□□□□□ -0.06
SS18-201ENST00000269137 SLC38A8A6NNN8 435 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 APOL1O14791 398 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 IRAK2O43187 625 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 DAPK3O43293 454 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 ITGAVP06756 1048 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 CTSAP10619 480 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 ZFXP17010 805 aaPredicted RBP14.64□□□□□ -0.07
SS18-201ENST00000269137 TGM2P21980 687 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 ZNF135P52742 658 aaPredicted RBP14.64□□□□□ -0.07
SS18-201ENST00000269137 DYNLT1P63172 113 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 OTUD4Q01804 1114 aaKnown RBP14.64□□□□□ -0.07
SS18-201ENST00000269137 EMBQ6PCB8 327 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 PLD5Q8N7P1 536 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 STKLD1Q8NE28 680 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 GPR152Q8TDT2 470 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 RNF139Q8WU17 664 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 IFT81Q8WYA0 676 aa14.64□□□□□ -0.07
SS18-201ENST00000269137 FBXO32Q969P5 355 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms