RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 GPR149Q86SP6 731 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 WDR49Q8IV35 697 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 C1orf127Q8N9H9 656 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 APPL2Q8NEU8 664 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 GDAP1Q8TB36 358 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 RAPGEF5Q92565 580 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 MAK16Q9BXY0 300 aaKnown RBP9.03□□□□□ -0.96
VPS4B-201ENST00000238497 MFSD1Q9H3U5 465 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 FBXL21Q9UKT6 434 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 MAGED2Q9UNF1 606 aaPredicted RBP9.03□□□□□ -0.96
VPS4B-201ENST00000238497 MAPK13O15264 365 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 LILRB3O75022 631 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 BANF1O75531 89 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 RNF8O76064 485 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 PROSCO94903 275 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 LRG1P02750 347 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 KCNE1P15382 129 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 IFT88Q13099 833 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 ZKSCAN8Q15776 578 aaPredicted RBP9.03□□□□□ -0.96
VPS4B-201ENST00000238497 P3H1Q32P28 736 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 SH3PXD2AQ5TCZ1 1133 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 C1orf228Q6PIY5 440 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.03□□□□□ -0.96
VPS4B-201ENST00000238497 RXFP1Q9HBX9 757 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 CNTN3Q9P232 1028 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 DNPEPQ9ULA0 475 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 NENFQ9UMX5 172 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 HCN4Q9Y3Q4 1203 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 TDRD15B5MCY1 1934 aaKnown RBP9.03□□□□□ -0.96
VPS4B-201ENST00000238497 TRIP11Q15643 1979 aa9.03□□□□□ -0.96
VPS4B-201ENST00000238497 ABLIM1O14639 778 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 RASGRF2O14827 1237 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 PPEF2O14830 753 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 KIAA0754O94854 1291 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 IVLP07476 585 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 OR4Q2P0C623 313 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 RPL9P32969 192 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ARSEP51690 589 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 NDST1P52848 882 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 YWHAHQ04917 246 aaPredicted RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 MTMR3Q13615 1198 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 C15orf59Q2T9L4 293 aaPredicted RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 IZUMO3Q5VZ72 239 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 BSPRYQ5W0U4 402 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF280DQ6N043 979 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF572Q7Z3I7 529 aaPredicted RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 SUGP1Q8IWZ8 645 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 SCUBE3Q8IX30 993 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 GLIS1Q8NBF1 620 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 TTC16Q8NEE8 873 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ING5Q8WYH8 240 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 DPP3Q9NY33 737 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 CPSF3Q9UKF6 684 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 RRP15Q9Y3B9 282 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 CST8O60676 142 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 XYLBO75191 536 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 LCP1P13796 627 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ECHS1P30084 290 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ABCD1P33897 745 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 HSPA9P38646 679 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 BASP1P80723 227 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 KYAT1Q16773 422 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 PTPN20Q4JDL3 420 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 RAB6CQ53S08 254 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 DUPD1Q68J44 220 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ANKS1BQ7Z6G8 1248 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 CCDC89Q8N998 374 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 TRIM11Q96F44 468 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 CPXM1Q96SM3 734 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 RAB6CQ9H0N0 254 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 SAYSD1Q9NPB0 183 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 SCINQ9Y6U3 715 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 DOCK6Q96HP0 2047 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 H7C4K7 107 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 TULP2O00295 520 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 CD48P09326 243 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 LSP1P33241 339 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 OGDHQ02218 1023 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 DHX34Q14147 1143 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 TAF12Q16514 161 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 FAXCQ5TGI0 409 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 RSPO2Q6UXX9 243 aaPredicted RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 MON1BQ7L1V2 547 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 RSAD2Q8WXG1 361 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 NDRG1Q92597 394 aaKnown RBP9.02□□□□□ -0.97
VPS4B-201ENST00000238497 B3GNT5Q9BYG0 378 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 SMOC2Q9H3U7 446 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 PLEKHA5Q9HAU0 1116 aa9.02□□□□□ -0.97
VPS4B-201ENST00000238497 ZFHX2Q9C0A1 2572 aaPredicted RBP9.01□□□□□ -0.97
VPS4B-201ENST00000238497 C19orf67A6NJJ6 358 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 VGLL3A8MV65 326 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 A8MXQ7 604 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 LOC730098B7Z3J9 87 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 NEFHP12036 1026 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 PDGFRAP16234 1089 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 ACAT1P24752 427 aaKnown RBP9.01□□□□□ -0.97
VPS4B-201ENST00000238497 ROR1Q01973 937 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 CENPCQ03188 943 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 MMRN1Q13201 1228 aa9.01□□□□□ -0.97
VPS4B-201ENST00000238497 ALKAL1Q6UXT8 129 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms