RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PNPOQ9NVS9 261 aa12.84□□□□□ -0.35
NUP88-201ENST00000225696 IL1RAPL1Q9NZN1 696 aa12.84□□□□□ -0.35
NUP88-201ENST00000225696 KCNG1Q9UIX4 513 aa12.84□□□□□ -0.35
NUP88-201ENST00000225696 SOX13Q9UN79 622 aa12.84□□□□□ -0.35
NUP88-201ENST00000225696 AFG3L2Q9Y4W6 797 aa12.84□□□□□ -0.35
NUP88-201ENST00000225696 A6NJR5 290 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 OGTO15294 1046 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PROCP04070 461 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 CXCL8P10145 99 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PDGFRAP16234 1089 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 AOC1P19801 751 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 CRHR1P34998 444 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 ZNF143P52747 638 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 DNAL1Q4LDG9 190 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 LIN52Q52LA3 116 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 EEF1DP3Q658K8 133 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 MAP1SQ66K74 1059 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 MBLAC2Q68D91 279 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 KYAT3Q6YP21 454 aaKnown RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 DHDDSQ86SQ9 333 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PDSS2Q86YH6 399 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 NETO2Q8NC67 525 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 OR6Y1Q8NGX8 325 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 SLC26A7Q8TE54 656 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 JDP2Q8WYK2 163 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 KCNN1Q92952 543 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 ZBED3Q96IU2 234 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 NIFKQ9BYG3 293 aaKnown RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 UBE2OQ9C0C9 1292 aaKnown RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 PAK5Q9P286 719 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PACSIN3Q9UKS6 424 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 MYO18AQ92614 2054 aaKnown RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 LOC100653049A0A140TA62 436 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 FAM159BA6NKW6 160 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 C2CD4BA6NLJ0 364 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 SIN3BO75182 1162 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 CSDE1O75534 798 aaKnown RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 KRT34O76011 436 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 OR6B1O95007 311 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 ALDOAP04075 364 aaKnown RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 PRKCGP05129 697 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 NFICP08651 508 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 FGF3P11487 239 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 TFE3P19532 575 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 ABCD1P33897 745 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 CDK7P50613 346 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 HMGCS2P54868 508 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PTPN11Q06124 597 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 WASHC5Q12768 1159 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 ASPHQ12797 758 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 SLC10A2Q12908 348 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 HIC1Q14526 733 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 EFHC1Q5JVL4 640 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 TCHHL1Q5QJ38 904 aaPredicted RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 ZPBP2Q6X784 338 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 RASSF3Q86WH2 238 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 TRIM50Q86XT4 487 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 HPS6Q86YV9 775 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 RNF149Q8NC42 400 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 MRPL4Q9BYD3 311 aaKnown RBP12.83□□□□□ -0.36
NUP88-201ENST00000225696 FAM192AQ9GZU8 254 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 C1orf21Q9H246 121 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 GPAMQ9HCL2 828 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 THAP1Q9NVV9 213 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PCDHGB4Q9UN71 923 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 TBC1D30Q9Y2I9 924 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PCDHGB5Q9Y5G0 923 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 PSAT1Q9Y617 370 aa12.83□□□□□ -0.36
NUP88-201ENST00000225696 TRDMT1O14717 391 aaKnown RBP12.82□□□□□ -0.36
NUP88-201ENST00000225696 ZBED1O96006 694 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 L1CAMP32004 1257 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 MAGEA3P43357 314 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 RGS7P49802 495 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 AP3M2P53677 418 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 LAMTOR4Q0VGL1 99 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 HNRNPDQ14103 355 aaKnown RBP12.82□□□□□ -0.36
NUP88-201ENST00000225696 PPM1JQ5JR12 505 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 C6orf163Q5TEZ5 329 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 PRAMEF18Q5VWM3 479 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 FBXL19Q6PCT2 694 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 FAM183BPQ6ZVS7 135 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 PHTF2Q8N3S3 785 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 C1orf127Q8N9H9 656 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.82□□□□□ -0.36
NUP88-201ENST00000225696 PPP2R3CQ969Q6 453 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 OXCT2Q9BYC2 517 aaPredicted RBP12.82□□□□□ -0.36
NUP88-201ENST00000225696 RLFQ13129 1914 aa12.82□□□□□ -0.36
NUP88-201ENST00000225696 KRT38O76015 456 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 PRKCBP05771 671 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 GABRB2P47870 512 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 ATXN1P54253 815 aaKnown RBP12.81□□□□□ -0.36
NUP88-201ENST00000225696 BCAR1P56945 870 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 GBE1Q04446 702 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 LAMB3Q13751 1172 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 KRT81Q14533 505 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 CCDC14Q49A88 953 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 PPP6R3Q5H9R7 873 aaPredicted RBP12.81□□□□□ -0.36
NUP88-201ENST00000225696 N4BP2L1Q5TBK1 243 aaPredicted RBP12.81□□□□□ -0.36
NUP88-201ENST00000225696 ARMC3Q5W041 872 aa12.81□□□□□ -0.36
NUP88-201ENST00000225696 TRIM42Q8IWZ5 723 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms