RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CAMK1Q14012 370 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MAPK11Q15759 364 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 IMPG1Q17R60 797 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 INSCQ1MX18 579 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 STOX1Q6ZVD7 989 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 C12orf50Q8NA57 414 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TRPV1Q8NER1 839 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MMTAG2Q9BU76 263 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 PNMA3Q9UL41 463 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 A0A087X0T9 212 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 KRT36O76013 467 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CHRNDQ07001 517 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC142Q17RM4 750 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FASTKD1Q53R41 847 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF667Q5HYK9 610 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 INTS11Q5TA45 600 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TWF2Q6IBS0 349 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TSEN2Q8NCE0 465 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 GPKOWQ92917 476 aaPredicted RBP eCLIP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 YME1L1Q96TA2 773 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ACAT2Q9BWD1 397 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 EXOSC4Q9NPD3 245 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MRPL39Q9NYK5 338 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MAD2L2Q9UI95 211 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ANAPC2Q9UJX6 822 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 QRICH2Q9H0J4 1663 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 A0A087WWV3 80 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ENTPD5O75356 428 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM32Q13049 653 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SQLEQ14534 574 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CDC73Q6P1J9 531 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FAM162AQ96A26 154 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SETDB2Q96T68 719 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FAM213AQ9BRX8 229 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ARHGAP20Q9P2F6 1191 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 KLHL8Q9P2G9 620 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TBX22Q9Y458 520 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FLT1P17948 1338 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 DNM1LO00429 736 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 KLF11O14901 512 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 HAT1O14929 419 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 S100A6P06703 90 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TBC1D10BQ4KMP7 808 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF767PQ75MW2 155 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 KLHL32Q96NJ5 620 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 OSBPL7Q9BZF2 842 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SEMA4AQ9H3S1 761 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NOL11Q9H8H0 719 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 VTA1Q9NP79 307 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MAGI3Q5TCQ9 1506 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 REM1O75628 298 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FDX1P10109 184 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 GNA15P30679 374 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 PDK1Q15118 436 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TFDP3Q5H9I0 405 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TJAP1Q5JTD0 557 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CACHD1Q5VU97 1274 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 NT5DC3Q86UY8 548 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TCEAL7Q9BRU2 100 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 KIAA1257Q9ULG3 409 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CEMIPQ8WUJ3 1361 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ERVV-1B6SEH8 477 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 MPZL2O60487 215 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 SERPINA1P01009 418 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 LSAMPQ13449 338 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 FBXO43Q4G163 708 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CYB5R4Q7L1T6 521 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 TRABD2AQ86V40 505 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ASCC1Q8N9N2 400 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 POC5Q8NA72 575 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 RBM17Q96I25 401 aaKnown RBP4.8□□□□□ -1.64
SCN1A-220ENST00000641603 WNK4Q96J92 1243 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 RDH12Q96NR8 316 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 CPNE1Q99829 537 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ARHGEF38Q9NXL2 777 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 ZSWIM5Q9P217 1185 aa4.8□□□□□ -1.64
SCN1A-220ENST00000641603 A0A0G2JPF8 293 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 METTL21EPA6NDL7 271 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HNRNPCL3B7ZW38 293 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 H6PDO95479 791 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HNRNPCL4P0DMR1 293 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HNF4AP41235 474 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MGAT5Q09328 741 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ANO4Q32M45 955 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PLET1Q6UQ28 207 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SH3RF1Q7Z6J0 888 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TMEM139Q8IV31 216 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GALNT6Q8NCL4 622 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HOPXQ9BPY8 73 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 RACGAP1Q9H0H5 632 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FKBP14Q9NWM8 211 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 DNAJC28Q9NX36 388 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC189A1A4V9 331 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 WNT7AO00755 349 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF197O14709 1029 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF609O15014 1411 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MAGEB3O15480 346 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TULP3O75386 442 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PAX3P23760 479 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms