RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FBXO11Q86XK2 927 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AGGF1Q8N302 714 aaeCLIP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FAM160A2Q8N612 972 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 U2AF1L4Q8WU68 220 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 THRSPQ92748 146 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEF1Q9HAY2 307 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C3orf14Q9HBI5 128 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 VPS45Q9NRW7 570 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ADARB2Q9NS39 739 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TMX2Q9Y320 296 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SCAF11Q99590 1463 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FANCD2Q9BXW9 1451 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HNRNPDLO14979 420 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SIN3BO75182 1162 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ACSL3O95573 720 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PLGP00747 810 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ARF4P18085 180 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MAPK4P31152 587 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 DNAJA1P31689 397 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CTNNB1P35222 781 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 IFNGR2P38484 337 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ACTR1AP61163 376 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FKBP1BP68106 108 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HSF2Q03933 536 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TXNDC11Q6PKC3 985 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 POTEAQ6S8J7 498 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EFL1Q7Z2Z2 1120 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ADCK2Q7Z695 626 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ACOT12Q8WYK0 555 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TEKT5Q96M29 485 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AP1S3Q96PC3 154 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TTLL2Q9BWV7 592 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SH3BP4Q9P0V3 963 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RPH3AQ9Y2J0 694 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PADI2Q9Y2J8 665 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NFE2L3Q9Y4A8 694 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 A0A0G2JPF8 293 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CFAP69A5D8W1 941 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HNRNPCL3B7ZW38 293 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SGK1O00141 431 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GCP02774 474 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MSL3P1P0C860 447 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HNRNPCL4P0DMR1 293 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MYBL1P10243 752 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PTPN1P18031 435 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CASP5P51878 434 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MFAP3P55082 362 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 VSX2P58304 361 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 COPZ1P61923 177 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TMPRSS15P98073 1019 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EHHADHQ08426 723 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KLHL30Q0D2K2 578 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PTPN21Q16825 1174 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EXOC3L4Q17RC7 722 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C10orf120Q5SQS8 335 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MFSD14BQ5SR56 506 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PMF1Q6P1K2 205 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TSHZ1Q6ZSZ6 1077 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF654Q8IZM8 581 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 WDR36Q8NI36 951 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 OSBPL2Q9H1P3 480 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 COPS7AQ9UBW8 275 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SUSD2Q9UGT4 822 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FBXO9Q9UK97 447 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SLC30A1Q9Y6M5 507 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 USP31Q70CQ4 1352 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C2orf81A6NN90 581 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EYA2O00167 538 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TM9SF1O15321 606 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 VPS26AO75436 327 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MED24O75448 989 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ATP6V1B1P15313 513 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FGFR3P22607 806 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RBMS1P29558 406 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 IL6STP40189 918 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SLC11A2P49281 568 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SLC7A2P52569 658 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TGFB2P61812 414 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C2orf54Q08AI8 447 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ASPRV1Q53RT3 343 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF618Q5T7W0 954 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 DEF8Q6ZN54 512 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FAM45AQ8TCE6 357 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MMP19Q99542 508 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CATSPERBQ9H7T0 1116 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KLHL11Q9NVR0 708 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NAV2Q8IVL1 2488 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KIAA0586Q9BVV6 1533 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KDM5DQ9BY66 1539 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 VWA3AA6NCI4 1184 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GPR37L1O60883 481 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RPS6KA5O75582 802 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HAUS5O94927 633 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PCSK2P16519 638 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TCEA1P23193 301 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ALDH18A1P54886 795 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PPIGQ13427 754 aaKnown RBP eCLIP2.86□□□□□ -1.958e-7■■■□□ 15.7
SCN1A-219ENST00000641575 CAMK2DQ13557 499 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TFDP2Q14188 446 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NDUFA9Q16795 377 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms