RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FAM49BQ9NUQ9 324 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 DNAAF2Q9NVR5 837 aaKnown RBP20.49■□□□□ 0.87
CLN3-262ENST00000637699 CGNQ9P2M7 1197 aaKnown RBP20.49■□□□□ 0.87
CLN3-262ENST00000637699 LSM7Q9UK45 103 aaKnown RBP20.49■□□□□ 0.87
CLN3-262ENST00000637699 MYH10P35580 1976 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 WASH3PC4AMC7 463 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 STX6O43752 255 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 SH3BP5O60239 455 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 PPP6R2O75170 966 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 VNN1O95497 513 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 C4BPAP04003 597 aaKnown RBP20.48■□□□□ 0.87
CLN3-262ENST00000637699 MAOBP27338 520 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 DGKGP49619 791 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 NDST1P52848 882 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 AP3M2P53677 418 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 GOLGA8FQ08AF8 430 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 GOLGA8DPQ0D2H9 430 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 BMT2Q1RMZ1 405 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 ZNF423Q2M1K9 1284 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 KIAA1324Q6UXG2 1013 aaKnown RBP20.48■□□□□ 0.87
CLN3-262ENST00000637699 SPRYD3Q8NCJ5 442 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 ZNF419Q96HQ0 510 aaPredicted RBP20.48■□□□□ 0.87
CLN3-262ENST00000637699 MRGPRX1Q96LB2 322 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 FAM124BQ9H5Z6 455 aaPredicted RBP20.48■□□□□ 0.87
CLN3-262ENST00000637699 CSNK1G1Q9HCP0 422 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 OSER1Q9NX31 292 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 MARK1Q9P0L2 795 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 HMGXB4Q9UGU5 601 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 NUDT5Q9UKK9 219 aa20.48■□□□□ 0.87
CLN3-262ENST00000637699 ANKRD11Q6UB99 2663 aaPredicted RBP20.47■□□□□ 0.87
CLN3-262ENST00000637699 FAM221BA6H8Z2 402 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 TAF4O00268 1085 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 MDM4O15151 490 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 POLR2DO15514 142 aaKnown RBP20.47■□□□□ 0.87
CLN3-262ENST00000637699 CUTAO60888 179 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 ADORA2BP29275 332 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 HNRNPDQ14103 355 aaKnown RBP20.47■□□□□ 0.87
CLN3-262ENST00000637699 TRIP6Q15654 476 aaKnown RBP20.47■□□□□ 0.87
CLN3-262ENST00000637699 SYCP2LQ5T4T6 812 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 GPRIN1Q7Z2K8 1008 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 RAB44Q7Z6P3 723 aaPredicted RBP20.47■□□□□ 0.87
CLN3-262ENST00000637699 CRYBG2Q8N1P7 616 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 BACH2Q9BYV9 841 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 CYLDQ9NQC7 956 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 PLK2Q9NYY3 685 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 PCDHB9Q9Y5E1 797 aa20.47■□□□□ 0.87
CLN3-262ENST00000637699 CYP26A1O43174 497 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 CISD3P0C7P0 127 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 FAM200BP0CF97 657 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 P4HA1P13674 534 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 GNSP15586 552 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 AFMP43652 599 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 DLG4P78352 724 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 CLDN10P78369 228 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 SGSM1Q2NKQ1 1148 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 FOXJ1Q92949 421 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 INTS4Q96HW7 963 aaKnown RBP20.46■□□□□ 0.87
CLN3-262ENST00000637699 ZNF396Q96N95 335 aaPredicted RBP20.46■□□□□ 0.87
CLN3-262ENST00000637699 NMUR1Q9HB89 426 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.46■□□□□ 0.876e-9■■■■■ 134.6
CLN3-262ENST00000637699 SCML2Q9UQR0 700 aa20.46■□□□□ 0.87
CLN3-262ENST00000637699 GJB3O75712 270 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 ACO1P21399 889 aaKnown RBP20.45■□□□□ 0.86
CLN3-262ENST00000637699 SLC14A1Q13336 389 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 CUL4BQ13620 913 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 WDR45BQ5MNZ6 344 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 SPOPLQ6IQ16 392 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 PNPLA1Q8N8W4 532 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 GOLGA5Q8TBA6 731 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 MAGEF1Q9HAY2 307 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 SUSD2Q9UGT4 822 aa20.45■□□□□ 0.86
CLN3-262ENST00000637699 FASNP49327 2511 aaKnown RBP20.45■□□□□ 0.86
CLN3-262ENST00000637699 ITPR1Q14643 2758 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 PVALEFA0A1B0GWK0 134 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 A0A1W2PQH9 124 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 GFRA2O00451 464 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 RARGP13631 454 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 CD6P30203 668 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 PLA2G4AP47712 749 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 C10orf120Q5SQS8 335 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 CLEC20AQ6ZU45 233 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 UNC93AQ86WB7 457 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 NAXDQ8IW45 347 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 DNMT3LQ9UJW3 386 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 STON1Q9Y6Q2 735 aa20.44■□□□□ 0.86
CLN3-262ENST00000637699 MEI4A8MW99 385 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 HHLA1C9JL84 531 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 YEATS4O95619 227 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 CAPNS1P04632 268 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 RPN1P04843 607 aaKnown RBP20.43■□□□□ 0.86
CLN3-262ENST00000637699 SCAPQ12770 1279 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 GRIK2Q13002 908 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 STARD3Q14849 445 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 ACAP1Q15027 740 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 FUT11Q495W5 492 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 FOXD4L5Q5VV16 416 aaPredicted RBP20.43■□□□□ 0.86
CLN3-262ENST00000637699 Q6ZNB5 142 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 PROSER1Q86XN7 944 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 GRAMD1CQ8IYS0 662 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 FOXD4L4Q8WXT5 416 aaPredicted RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms