RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 STK31Q9BXU1 1019 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 STEAP1Q9UHE8 339 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 HDAC9Q9UKV0 1011 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 RIMKLBQ9ULI2 386 aa3.54□□□□□ -1.84
SCN1A-208ENST00000625916 TMEM272A0A1B0GTI8 110 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 MBD3L4A6NDZ8 208 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-208ENST00000625916 MBD3L3A6NE82 208 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-208ENST00000625916 F8W810 466 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 PYCARD-AS1I3L0S3 204 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 AGPSO00116 658 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 RRHO14718 337 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 SNX2O60749 519 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 EPN2O95208 641 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 PLA2G2AP14555 144 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 HSPA6P17066 643 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 NEK2P51955 445 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 CCDC15Q0P6D6 951 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 ARHGEF7Q14155 803 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 BRDTQ58F21 947 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-208ENST00000625916 CAPRIN2Q6IMN6 1127 aaKnown RBP3.53□□□□□ -1.84
SCN1A-208ENST00000625916 FBXL14Q8N1E6 418 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 SLC44A5Q8NCS7 719 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 BCAS4Q8TDM0 211 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 JPH3Q8WXH2 748 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-208ENST00000625916 MAML1Q92585 1016 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 HOOK2Q96ED9 719 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 SUCLG2Q96I99 432 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 LRGUKQ96M69 825 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 NTPCRQ9BSD7 190 aaKnown RBP3.53□□□□□ -1.84
SCN1A-208ENST00000625916 CINPQ9BW66 212 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-208ENST00000625916 SACM1LQ9NTJ5 587 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 SELENONQ9NZV5 590 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 MSRB1Q9NZV6 116 aa3.53□□□□□ -1.84
SCN1A-208ENST00000625916 SLC22A23A1A5C7 686 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ERVV-2B6SEH9 535 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ZNF814B7Z6K7 855 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 RAB27BO00194 218 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 TBX3O15119 743 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 CA12O43570 354 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 AKAP10O43572 662 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 PRAMEF2O60811 474 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 KLRC1P26715 233 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 TNFRSF8P28908 595 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 NTSR1P30989 418 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 EIF4A1P60842 406 aaKnown RBP3.52□□□□□ -1.85
SCN1A-208ENST00000625916 MTA1Q13330 715 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 PTGR1Q14914 329 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ANO6Q4KMQ2 910 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ZNF324BQ6AW86 544 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-208ENST00000625916 PDXDC1Q6P996 788 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 CLEC9AQ6UXN8 241 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 P3H2Q8IVL5 708 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ADGRF4Q8IZF3 695 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 IL31RAQ8NI17 732 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ATP2A3Q93084 1043 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ZNF668Q96K58 619 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-208ENST00000625916 LMLNQ96KR4 655 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 HIST1H2AAQ96QV6 131 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ACO2Q99798 780 aaKnown RBP3.52□□□□□ -1.85
SCN1A-208ENST00000625916 NMRK2Q9NPI5 230 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 ANAPC4Q9UJX5 808 aa3.52□□□□□ -1.85
SCN1A-208ENST00000625916 HEMK1Q9Y5R4 338 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-208ENST00000625916 SPATA31A1Q5TZJ5 1347 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 TLX3O43711 291 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 UGDHO60701 494 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 TPH1P17752 444 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 RPS6KB1P23443 525 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 TBXAS1P24557 533 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 YY1P25490 414 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 HOXA7P31268 230 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 GALNSP34059 522 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 KCNJ4P48050 445 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 SUMO3P55854 103 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 P2RX3P56373 397 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 WDR5P61964 334 aaKnown RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 SLC29A2Q14542 456 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 INPP5JQ15735 1006 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 USP49Q70CQ1 688 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 TFAP2DQ7Z6R9 452 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 MICU3Q86XE3 530 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 COL23A1Q86Y22 540 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 RFX6Q8HWS3 928 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 FAM84BQ96KN1 310 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 ARHGAP39Q9C0H5 1083 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 RBM38Q9H0Z9 239 aaKnown RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 MYLK2Q9H1R3 596 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 DHX36Q9H2U1 1008 aaKnown RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 ATP6V0A4Q9HBG4 840 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 AGO4Q9HCK5 861 aaKnown RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 MLXIPLQ9NP71 852 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 PCDH12Q9NPG4 1184 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 PAPOLBQ9NRJ5 636 aaKnown RBP3.51□□□□□ -1.85
SCN1A-208ENST00000625916 PCDHA12Q9UN75 941 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 COL4A3BPQ9Y5P4 624 aa3.51□□□□□ -1.85
SCN1A-208ENST00000625916 USP19O94966 1318 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 A0A1W2PPC1 479 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 TRIM43BA6NCK2 446 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 AQP7P3A6NL99 342 aa3.5□□□□□ -1.85
SCN1A-208ENST00000625916 IFITM10A6NMD0 228 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms