RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 DENND1BQ6P3S1 775 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 TPGS1Q6ZTW0 290 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 PTAR1Q7Z6K3 402 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 BBS7Q8IWZ6 715 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 KRT78Q8N1N4 520 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 FIBCD1Q8N539 461 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 FBXO36Q8NEA4 188 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CEP70Q8NHQ1 597 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 KAZALD1Q96I82 304 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ARHGAP23Q9P227 1491 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 DISP2A7MBM2 1401 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ACKR2O00590 384 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ADCY6O43306 1168 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ITGB6P18564 788 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 HALP42357 657 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 FNTAP49354 379 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CCZ1BP86790 482 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CCZ1P86791 482 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 DNAL1Q4LDG9 190 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 KHDRBS2Q5VWX1 349 aaKnown RBP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CCNJLQ8IV13 435 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 TATDN2Q93075 761 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ZNF333Q96JL9 665 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ROPN1BQ9BZX4 212 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ROPN1Q9HAT0 212 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 MRGBPQ9NV56 204 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 TFR2Q9UP52 801 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 SLIT1O75093 1534 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CYTH3O43739 400 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 BDNFP23560 247 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 MAP2K5Q13163 448 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 FUT11Q495W5 492 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 SLC44A2Q8IWA5 706 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CYGBQ8WWM9 190 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ASB7Q9H672 318 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 RMND5AQ9H871 391 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 RBM22Q9NW64 420 aaKnown RBP eCLIP11.72□□□□□ -0.532e-7■■■□□ 15.8
CLIP1-219ENST00000620786 NDOR1Q9UHB4 597 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 NRCAMQ92823 1304 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CD44P16070 742 aaKnown RBP11.72□□□□□ -0.53
CLIP1-219ENST00000620786 SLC16A1P53985 500 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 SLC9A5Q14940 896 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ILDR2Q71H61 639 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 CMTM5Q96DZ9 223 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 UROC1Q96N76 676 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 RRN3Q9NYV6 651 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 ZBTB39O15060 712 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 MTA2O94776 668 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 TRPC1P48995 793 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 RARRES1P49788 294 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SCNN1GP51170 649 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 RAD23BP54727 409 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 DDX42Q86XP3 938 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SLC2A14Q8TDB8 520 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SUSD6Q92537 303 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 COPS5Q92905 334 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 TUBGCP3Q96CW5 907 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 ECSITQ9BQ95 431 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 DCLK3Q9C098 648 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 INTS13Q9NVM9 706 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 DCDC2Q9UHG0 476 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SPATA31D1Q6ZQQ2 1576 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 GNG14A0A1W2PPG7 69 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SKAP2O75563 359 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SLITRK3O94933 977 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 RRM1P23921 792 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 PTPN3P26045 913 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 MDH1P40925 334 aaKnown RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 PLIN5Q00G26 463 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 AASDHQ4L235 1098 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SV2AQ7L0J3 742 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 OTOP1Q7RTM1 612 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 OTOAQ7RTW8 1153 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 COLGALT1Q8NBJ5 622 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 ELMO3Q96BJ8 720 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 GAD1Q99259 594 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 WDR41Q9HAD4 459 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 AKAP7Q9P0M2 348 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 TRAV19A0A0A6YYK7 116 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 TIMM44O43615 452 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 GLRA3O75311 464 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 PRKAR2AP13861 404 aaKnown RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 GLRBP48167 497 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 TOB1P50616 345 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 PRPF39Q86UA1 669 aaKnown RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 LONP2Q86WA8 852 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 SPIRE2Q8WWL2 714 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 USP20Q9Y2K6 914 aa11.71□□□□□ -0.53
CLIP1-219ENST00000620786 MTO1Q9Y2Z2 717 aaKnown RBP11.71□□□□□ -0.53
CLIP1-219ENST00000620786 KDM4FA0A1W2PPD8 638 aa11.71□□□□□ -0.54
CLIP1-219ENST00000620786 TBC1D3BA6NDS4 549 aa11.71□□□□□ -0.54
CLIP1-219ENST00000620786 MGAT4DA6NG13 374 aa11.71□□□□□ -0.54
CLIP1-219ENST00000620786 ANKRD65E5RJM6 399 aa11.71□□□□□ -0.54
CLIP1-219ENST00000620786 UBA1P22314 1058 aaKnown RBP11.71□□□□□ -0.54
CLIP1-219ENST00000620786 ZDHHC17Q8IUH5 632 aa11.71□□□□□ -0.54
CLIP1-219ENST00000620786 TRPM4Q8TD43 1214 aa11.71□□□□□ -0.54
CLIP1-219ENST00000620786 DIS3LQ8TF46 1054 aaKnown RBP11.71□□□□□ -0.54
CLIP1-219ENST00000620786 C1QTNF7Q9BXJ2 289 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms