RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ZNF292O60281 2723 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 TMCO5BA8MYB1 307 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 TRDMT1O14717 391 aaKnown RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 CHADO15335 359 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 STC2O76061 302 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 LTFP02788 710 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 CYP1A1P04798 512 aaPredicted RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 DCNP07585 359 aaKnown RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 PPP3CCP48454 512 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 ZNF268Q14587 947 aaPredicted RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 BTBD8Q5XKL5 378 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 HGSNATQ68CP4 663 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 MMS22LQ6ZRQ5 1243 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 DEPDC1BQ8WUY9 529 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 PBXIP1Q96AQ6 731 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 MYEOVQ96EZ4 313 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 LHX5Q9H2C1 402 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 HAUS4Q9H6D7 363 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 TBC1D17Q9HA65 648 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 RBM12Q9NTZ6 932 aaKnown RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 POLR3BQ9NW08 1133 aaPredicted RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 COMMD8Q9NX08 183 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 DUS2Q9NX74 493 aaKnown RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 EHD2Q9NZN4 543 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 XPO7Q9UIA9 1087 aaKnown RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 UNGP13051 313 aaPredicted RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 CDH5P33151 784 aaPredicted RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 TUBP50607 506 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 TPM4P67936 248 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 OTUD1Q5VV17 481 aaPredicted RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 OR6B2Q6IFH4 312 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 RSRC2Q7L4I2 434 aaKnown RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 FMNL3Q8IVF7 1028 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 YAF2Q8IY57 180 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 TMEM105Q8N8V8 129 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 EZH1Q92800 747 aaPredicted RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 C11orf70Q9BRQ4 267 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 DNAI2Q9GZS0 605 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 PDCL3Q9H2J4 239 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 SEPT11Q9NVA2 429 aaKnown RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 CLIC5Q9NZA1 410 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 MARCH2Q9P0N8 246 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 SYNJ2BP-COX16A0A087WUM0 186 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 SLC12A8A0AV02 714 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 GOLGA8SH3BPF8 625 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 ATMINO43313 823 aaPredicted RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 CYP17A1P05093 508 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 NCAM1P13591 858 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 TARSP26639 723 aaKnown RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 ATXN1P54253 815 aaKnown RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 RNASE9P60153 205 aaKnown RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 PTP4A2Q12974 167 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 FZD5Q13467 585 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 MLF2Q15773 248 aaPredicted RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 RHBDF2Q6PJF5 856 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 TAC4Q86UU9 113 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 XYLT1Q86Y38 959 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 ADGRG2Q8IZP9 1017 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 DQX1Q8TE96 717 aaKnown RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 STK32AQ8WU08 396 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 OSCP1Q8WVF1 389 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 IRF7Q92985 503 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 ZDHHC4Q9NPG8 344 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 TMPRSS4Q9NRS4 437 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 C2orf42Q9NWW7 574 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 OBP2AQ9NY56 170 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 PLK2Q9NYY3 685 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 COX16Q9P0S2 106 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 WNT16Q9UBV4 365 aa14.11□□□□□ -0.15
LINC00540-202ENST00000616974 NDRG2Q9UN36 371 aaKnown RBP14.11□□□□□ -0.15
LINC00540-202ENST00000616974 FLT3P36888 993 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 GGCXP38435 758 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 BPIFB4P59827 614 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 MEA1Q16626 185 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 TMEM25Q86YD3 366 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 DEFB106AQ8N104 65 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 EMC1Q8N766 993 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 AGPAT1Q99943 283 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 ECT2Q9H8V3 914 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 DNMT3LQ9UJW3 386 aa14.1□□□□□ -0.15
LINC00540-202ENST00000616974 GOLGA6L7A0A1B0GV03 622 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 I6L893 689 aaPredicted RBP14.09□□□□□ -0.15
LINC00540-202ENST00000616974 GPR37L1O60883 481 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 CTHP32929 405 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 SGSHP51688 502 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 ADKP55263 362 aaKnown RBP14.09□□□□□ -0.15
LINC00540-202ENST00000616974 RUNX3Q13761 415 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 ARHGAP29Q52LW3 1261 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 LY6G5CQ5SRR4 150 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 SH3PXD2AQ5TCZ1 1133 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 Q6ZNB5 142 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 TPGS1Q6ZTW0 290 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 DENND1CQ8IV53 801 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 VSTM4Q8IW00 320 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 ZNF687Q8N1G0 1237 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 ANLNQ9NQW6 1124 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 CLEC4EQ9ULY5 219 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 DOCK4Q8N1I0 1966 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 SPECC1L-ADORA2AF8WAN1 911 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 STK25O00506 426 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms