RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TAS1R2Q8TE23 839 aa19.99■□□□□ 0.79
CDX1-202ENST00000616154 HMGB4Q8WW32 186 aa19.99■□□□□ 0.79
CDX1-202ENST00000616154 PIGKQ92643 395 aa19.99■□□□□ 0.79
CDX1-202ENST00000616154 KLF16Q9BXK1 252 aaPredicted RBP19.99■□□□□ 0.79
CDX1-202ENST00000616154 MBD1Q9UIS9 605 aaPredicted RBP19.99■□□□□ 0.79
CDX1-202ENST00000616154 SCML2Q9UQR0 700 aa19.99■□□□□ 0.79
CDX1-202ENST00000616154 ADORA2BP29275 332 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 PPP1R2P41236 205 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 GCLMP48507 274 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 NOVA1P51513 510 aaKnown RBP19.98■□□□□ 0.79
CDX1-202ENST00000616154 PMS1P54277 932 aaKnown RBP19.98■□□□□ 0.79
CDX1-202ENST00000616154 FKBP3Q00688 224 aaKnown RBP19.98■□□□□ 0.79
CDX1-202ENST00000616154 SPDYCQ5MJ68 293 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 C10orf76Q5T2E6 689 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 CLEC20AQ6ZU45 233 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 GPRIN1Q7Z2K8 1008 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 ERCC4Q92889 916 aaPredicted RBP19.98■□□□□ 0.79
CDX1-202ENST00000616154 TWNKQ96RR1 684 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 HNRNPABQ99729 332 aaKnown RBP19.98■□□□□ 0.79
CDX1-202ENST00000616154 CYP3A43Q9HB55 503 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 APOBEC3GQ9HC16 384 aaKnown RBP19.98■□□□□ 0.79
CDX1-202ENST00000616154 MAN1B1Q9UKM7 699 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 STARD13Q9Y3M8 1113 aa19.98■□□□□ 0.79
CDX1-202ENST00000616154 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 HHLA1C9JL84 531 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 CDX4O14627 284 aaPredicted RBP19.97■□□□□ 0.79
CDX1-202ENST00000616154 MAP3K13O43283 966 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 TBX18O95935 607 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 EPB41P11171 864 aaKnown RBP19.97■□□□□ 0.79
CDX1-202ENST00000616154 ATP5C1P36542 298 aaKnown RBP19.97■□□□□ 0.79
CDX1-202ENST00000616154 IRX4P78413 519 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 KLHL40Q2TBA0 621 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 KRT39Q6A163 491 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 ANKRD40Q6AI12 368 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 GRAMD4Q6IC98 578 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 TMEFF1Q8IYR6 380 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 PGBD3Q8N328 593 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 FRMD1Q8N878 549 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 TSG101Q99816 390 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 NT5C1AQ9BXI3 368 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 IMPG2Q9BZV3 1241 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 PNPLA8Q9NP80 782 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 OSER1Q9NX31 292 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 MARK1Q9P0L2 795 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 HCN2Q9UL51 889 aa19.97■□□□□ 0.79
CDX1-202ENST00000616154 CYP26A1O43174 497 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 CACNG3O60359 315 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 BMP6P22004 513 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 DPP6P42658 865 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 PTGER3P43115 390 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 GOLGA8FQ08AF8 430 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 GOLGA8DPQ0D2H9 430 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 KLHDC10Q6PID8 442 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 SYT12Q8IV01 421 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 CYFIP2Q96F07 1278 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 DHTKD1Q96HY7 919 aaPredicted RBP19.96■□□□□ 0.79
CDX1-202ENST00000616154 NIF3L1Q9GZT8 377 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 FAM124BQ9H5Z6 455 aaPredicted RBP19.96■□□□□ 0.79
CDX1-202ENST00000616154 DNAJC17Q9NVM6 304 aaKnown RBP19.96■□□□□ 0.79
CDX1-202ENST00000616154 LSM7Q9UK45 103 aaKnown RBP19.96■□□□□ 0.79
CDX1-202ENST00000616154 COQ4Q9Y3A0 265 aa19.96■□□□□ 0.79
CDX1-202ENST00000616154 NEDD8-MDP1E9PL57 170 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 PSMA7O14818 248 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 GIPC1O14908 333 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 TRIM24O15164 1050 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 STX10O60499 249 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 HOXB2P14652 356 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 GABRG2P18507 467 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 CSRP1P21291 193 aaKnown RBP19.95■□□□□ 0.78
CDX1-202ENST00000616154 NTSR1P30989 418 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 MXI1P50539 228 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 LMAN2Q12907 356 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 MORC3Q14149 939 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 SKOR2Q2VWA4 1001 aaPredicted RBP19.95■□□□□ 0.78
CDX1-202ENST00000616154 TRIM61Q5EBN2 209 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 SH3PXD2AQ5TCZ1 1133 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 PEAR1Q5VY43 1037 aaPredicted RBP19.95■□□□□ 0.78
CDX1-202ENST00000616154 LYSMD4Q5XG99 296 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 ARMCX6Q7L4S7 300 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 MIB1Q86YT6 1006 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 JAKMIP2Q96AA8 810 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 EEF2KMTQ96G04 330 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 XPO6Q96QU8 1125 aaKnown RBP19.95■□□□□ 0.78
CDX1-202ENST00000616154 BBS2Q9BXC9 721 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 NMUR1Q9HB89 426 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.95■□□□□ 0.78
CDX1-202ENST00000616154 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.95■□□□□ 0.78
CDX1-202ENST00000616154 WDR35Q9P2L0 1181 aa19.95■□□□□ 0.78
CDX1-202ENST00000616154 CILPO75339 1184 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 RARGP13631 454 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 TYRP14679 529 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 CD44P16070 742 aaKnown RBP19.94■□□□□ 0.78
CDX1-202ENST00000616154 ACO1P21399 889 aaKnown RBP19.94■□□□□ 0.78
CDX1-202ENST00000616154 HOXD12P35452 270 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 EGFLAMQ63HQ2 1017 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 FBXL13Q8NEE6 735 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 CEP63Q96MT8 703 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 NUSAP1Q9BXS6 441 aaKnown RBP19.94■□□□□ 0.78
CDX1-202ENST00000616154 TMEM74BQ9NUR3 256 aa19.94■□□□□ 0.78
CDX1-202ENST00000616154 PILRBQ9UKJ0 227 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms