RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ATG16L1Q676U5 607 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 MZB1Q8WU39 189 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 LPIN3Q9BQK8 851 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 ELOVL4Q9GZR5 314 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 COL11A2P13942 1736 aaPredicted RBP15.82■□□□□ 0.12
UPF1-204ENST00000596842 SORBS2O94875 1100 aaKnown RBP15.82■□□□□ 0.12
UPF1-204ENST00000596842 GPD1P21695 349 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 STX3Q13277 289 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 KBTBD2Q8IY47 623 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 ENDOVQ8N8Q3 282 aaKnown RBP15.82■□□□□ 0.12
UPF1-204ENST00000596842 PHC3Q8NDX5 983 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 SKA1Q96BD8 255 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 ZNF518BQ9C0D4 1074 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 C20orf27Q9GZN8 174 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 SMYD2Q9NRG4 433 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 NDE1Q9NXR1 346 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 LNPEPQ9UIQ6 1025 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 LRCH1Q9Y2L9 728 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 STYXL1Q9Y6J8 313 aa15.82■□□□□ 0.12
UPF1-204ENST00000596842 TCRBV5S1A1TA0A578 114 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 A6NHS1 94 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 C6orf222P0C671 652 aaPredicted RBP15.81■□□□□ 0.12
UPF1-204ENST00000596842 ACADSP16219 412 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 DENND5BQ6ZUT9 1274 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 SH3TC2Q8TF17 1288 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 COPS5Q92905 334 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 TEPSINQ96N21 525 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 MAFBQ9Y5Q3 323 aaPredicted RBP15.81■□□□□ 0.12
UPF1-204ENST00000596842 KRT38O76015 456 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 HOXC6P09630 235 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 GTF2A2P52657 109 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 EML3Q32P44 896 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 VWA5B1Q5TIE3 1220 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 MAP7D3Q8IWC1 876 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 TRIM42Q8IWZ5 723 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 FAM172AQ8WUF8 416 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 CLMNQ96JQ2 1002 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 PHACTR1Q9C0D0 580 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 PPCSQ9HAB8 311 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 DNAJC16Q9Y2G8 782 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 ADGRA2Q96PE1 1338 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 NDC80O14777 642 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 APOL1O14791 398 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 STK10O94804 968 aaKnown RBP15.81■□□□□ 0.12
UPF1-204ENST00000596842 PTPRAP18433 802 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 SLC18A1P54219 525 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 COG7P83436 770 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 TFDP2Q14188 446 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 FAM160B1Q5W0V3 765 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 JADE1Q6IE81 842 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 FAM183BPQ6ZVS7 135 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 PCYT2Q99447 389 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 TUBB6Q9BUF5 446 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 WWP1Q9H0M0 922 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 DNAJC5Q9H3Z4 198 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 MINDY3Q9H8M7 445 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 TEX264Q9Y6I9 313 aa15.81■□□□□ 0.12
UPF1-204ENST00000596842 RARBP10826 455 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 STIP1P31948 543 aaKnown RBP15.8■□□□□ 0.12
UPF1-204ENST00000596842 ETV4P43268 484 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 TCHHL1Q5QJ38 904 aaPredicted RBP15.8■□□□□ 0.12
UPF1-204ENST00000596842 C1orf127Q8N9H9 656 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 AGBL3Q8NEM8 1001 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 XYLT2Q9H1B5 865 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 AS3MTQ9HBK9 375 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 TXNDC16Q9P2K2 825 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 LACTBL1A8MY62 500 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 E7ENQ6 273 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 ETS2P15036 469 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 DESP17661 470 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 RALGPS1Q5JS13 557 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 XRRA1Q6P2D8 792 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 ULK2Q8IYT8 1036 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 SLC4A11Q8NBS3 891 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 CCNYQ8ND76 341 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 TMEM176AQ96HP8 235 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 MAN1C1Q9NR34 630 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 TSPAN16Q9UKR8 245 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 CNTN6Q9UQ52 1028 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 NDST1P52848 882 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 GBE1Q04446 702 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 GJC2Q5T442 439 aaPredicted RBP15.8■□□□□ 0.12
UPF1-204ENST00000596842 ANGEL2Q5VTE6 544 aaKnown RBP15.8■□□□□ 0.12
UPF1-204ENST00000596842 FKBP1CQ5VVH2 108 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 UNC5AQ6ZN44 842 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 ACOT1Q86TX2 421 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 FAM81AQ8TBF8 368 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 AGAP3Q96P47 875 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 ZNF184Q99676 751 aaPredicted RBP15.8■□□□□ 0.12
UPF1-204ENST00000596842 MMADHCQ9H3L0 296 aaPredicted RBP15.8■□□□□ 0.12
UPF1-204ENST00000596842 PAK5Q9P286 719 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 PPM1HQ9ULR3 514 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 PLLPQ9Y342 182 aa15.8■□□□□ 0.12
UPF1-204ENST00000596842 KIAA1217Q5T5P2 1943 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 TRAFD1O14545 582 aaPredicted RBP15.79■□□□□ 0.12
UPF1-204ENST00000596842 CCNG1P51959 295 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.79■□□□□ 0.12
UPF1-204ENST00000596842 CES4AQ5XG92 561 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 PLD5Q8N7P1 536 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 ZNF398Q8TD17 642 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms