RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 RALAP11233 206 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 CYP11B1P15538 503 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 CHRNB2P17787 502 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 OPRD1P41143 372 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 PTK2Q05397 1052 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 MTAPQ13126 283 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 PDCLQ13371 301 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 CCINQ13939 588 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 TAF5Q15542 800 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 SKOR2Q2VWA4 1001 aaPredicted RBP11.68□□□□□ -0.54
VRK3-210ENST00000596121 TMEM196Q5HYL7 178 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 LY6G5CQ5SRR4 150 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 BTBD8Q5XKL5 378 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 SMYD5Q6GMV2 418 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 Q6ZS52 159 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 C12orf40Q86WS4 652 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 DDX42Q86XP3 938 aaKnown RBP eCLIP11.68□□□□□ -0.54
VRK3-210ENST00000596121 SFTPA1Q8IWL2 248 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 ARHGAP18Q8N392 663 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 CPA6Q8N4T0 437 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 KIAA1958Q8N8K9 716 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 C1orf131Q8NDD1 294 aaKnown RBP11.68□□□□□ -0.54
VRK3-210ENST00000596121 SLC20A1Q8WUM9 679 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 IRGQQ8WZA9 623 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 ATP2A3Q93084 1043 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 LHX5Q9H2C1 402 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 ST7Q9NRC1 585 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 MARCH2Q9P0N8 246 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 SFMBT1Q9UHJ3 866 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 NOCTQ9UK39 431 aaKnown RBP11.68□□□□□ -0.54
VRK3-210ENST00000596121 MRPS17Q9Y2R5 130 aaKnown RBP11.68□□□□□ -0.54
VRK3-210ENST00000596121 SH3BP1Q9Y3L3 701 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 HCN4Q9Y3Q4 1203 aa11.68□□□□□ -0.54
VRK3-210ENST00000596121 A0A1B0GTH6 734 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 SLC12A8A0AV02 714 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 MSI1O43347 362 aaKnown RBP11.67□□□□□ -0.54
VRK3-210ENST00000596121 GFPT2O94808 682 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 EGFP01133 1207 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 ERBB2P04626 1255 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 RPS9P46781 194 aaKnown RBP11.67□□□□□ -0.54
VRK3-210ENST00000596121 NUBP1P53384 320 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 PITX1P78337 314 aaPredicted RBP11.67□□□□□ -0.54
VRK3-210ENST00000596121 NR1I3Q14994 352 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 PTPN20Q4JDL3 420 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 TAF3Q5VWG9 929 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 SYPL2Q5VXT5 272 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 PKN3Q6P5Z2 889 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 FMNL3Q8IVF7 1028 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 ANKRD20A12PQ8NF67 263 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 MSANTD3Q96H12 275 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 PPP1R13BQ96KQ4 1090 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 PHOX2BQ99453 314 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 P2RY13Q9BPV8 354 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 CHRDQ9H2X0 955 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 ABCC13Q9NSE7 274 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 POLR3BQ9NW08 1133 aaPredicted RBP11.67□□□□□ -0.54
VRK3-210ENST00000596121 NAALADL1Q9UQQ1 740 aa11.67□□□□□ -0.54
VRK3-210ENST00000596121 MIA3Q5JRA6 1907 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 DMDP11532 3685 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 SLC9A3R1O14745 358 aaPredicted RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 TRIM24O15164 1050 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 FBXO21O94952 628 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 NFATC1O95644 943 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 LTFP02788 710 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 TPM2P07951 284 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 MMEP08473 750 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 CHRM1P11229 460 aaPredicted RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 CDH5P33151 784 aaPredicted RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 KRT9P35527 623 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 SOX5P35711 763 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 ACADSBP45954 432 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 BPIFB4P59827 614 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 ANGPT1Q15389 498 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 TRIP4Q15650 581 aaPredicted RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 MSANTD2Q6P1R3 559 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 RSRC2Q7L4I2 434 aaKnown RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 C1orf210Q8IVY1 113 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 PHTF2Q8N3S3 785 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 NEK11Q8NG66 645 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 OLIG1Q8TAK6 271 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 EPS8L1Q8TE68 723 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 PCMTD1Q96MG8 357 aaPredicted RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 PCDHB18PQ96TA0 734 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 KCNH6Q9H252 994 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 SPHK2Q9NRA0 654 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 FAM86C1Q9NVL1 165 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 TBC1D14Q9P2M4 693 aa11.66□□□□□ -0.54
VRK3-210ENST00000596121 AGO1Q9UL18 857 aaKnown RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 ARIH1Q9Y4X5 557 aaPredicted RBP11.66□□□□□ -0.54
VRK3-210ENST00000596121 MYO15AQ9UKN7 3530 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 ATG2BQ96BY7 2078 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 K7EQS6 105 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 ADH5P11766 374 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 CORO1AP31146 461 aaKnown RBP11.65□□□□□ -0.54
VRK3-210ENST00000596121 COG7P83436 770 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 FMO1Q01740 532 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 NHLH1Q02575 133 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 C2CD6Q53TS8 623 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 TSSK4Q6SA08 328 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 FAM183BPQ6ZVS7 135 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms