RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	TRPV1	Q8NER1	839 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	CAGE1	Q8TC20	777 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	NSUN6	Q8TEA1	469 aa	Known RBP	5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	SCFD2	Q8WU76	684 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	PIBF1	Q8WXW3	757 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	LINC00476	Q8WZB0	136 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	FERMT2	Q96AC1	680 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	JAKMIP1	Q96N16	626 aa	Known RBP	5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	IPO9	Q96P70	1041 aa	Known RBP	5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	PIGS	Q96S52	555 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	DCLRE1C	Q96SD1	692 aa	Known RBP	5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	TSPAN18	Q96SJ8	248 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	MAP3K14	Q99558	947 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	PDCD2L	Q9BRP1	358 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	LRFN3	Q9BTN0	628 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	MYL10	Q9BUA6	226 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	CCDC113	Q9H0I3	377 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	LY9	Q9HBG7	655 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	CHST12	Q9NRB3	414 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	RNF7	Q9UBF6	113 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	MAD2L2	Q9UI95	211 aa		5.25	□□□□□ -1.57
ZNF540-204	ENST00000586792	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	KLF18	A0A0U1RQI7	1052 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	CCDC196	A0A1B0GTZ2	297 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	DYTN	A2CJ06	578 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	GOLGA8A	A7E2F4	631 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	AHRR	A9YTQ3	701 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	GCOM1	H8Y6P7	765 aa	Predicted RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	POLR2M	P0CAP2	368 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	MYCL	P12524	364 aa	Predicted RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	RXRA	P19793	462 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	SMARCA1	P28370	1054 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	CCND2	P30279	289 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	SOX5	P35711	763 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	METAP2	P50579	478 aa	Known RBP eCLIP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	ACLY	P53396	1101 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	AKAP17A	Q02040	695 aa	Known RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	ROM1	Q03395	351 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	FOXF2	Q12947	444 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	HEATR3	Q7Z4Q2	680 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	LILRB2	Q8N423	598 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	C9orf106	Q8NAJ2	232 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	GLB1L3	Q8NCI6	653 aa	Predicted RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	OR6J1	Q8NGC5	347 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	HNRNPLL	Q8WVV9	542 aa	Known RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	IWS1	Q96ST2	819 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	RMDN3	Q96TC7	470 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	CPPED1	Q9BRF8	314 aa	Predicted RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	SPZ1	Q9BXG8	430 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	LRRC2	Q9BYS8	371 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	KCMF1	Q9P0J7	381 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	GTF2A1L	Q9UNN4	478 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	CYP46A1	Q9Y6A2	500 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	HTT	P42858	3142 aa		5.24	□□□□□ -1.57
ZNF540-204	ENST00000586792	CENPF	P49454	3210 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	BRCA2	P51587	3418 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	hCG_1984214	I3L0E3	225 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	MTSS1	O43312	755 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	PQBP1	O60828	265 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	RNASEH2A	O75792	299 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	CABYR	O75952	493 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	ASGR1	P07306	291 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	TXN	P10599	105 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	CAST	P20810	708 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	CST5	P28325	142 aa	Predicted RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	HOXA13	P31271	388 aa	Predicted RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	HSPA4	P34932	840 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	DEK	P35659	375 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	BMPR1A	P36894	532 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	RCAN1	P53805	252 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	TERF1	P54274	439 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	SUMO1	P63165	101 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	FSCN1	Q16658	493 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	LRRC26	Q2I0M4	334 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	TRIM60	Q495X7	471 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	TM4SF20	Q53R12	229 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	CATSPERE	Q5SY80	951 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	KRTAP5-11	Q6L8G4	156 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	CPLX2	Q6PUV4	134 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	APOA5	Q6Q788	366 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	SLC39A5	Q6ZMH5	540 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	SEPT14	Q6ZU15	432 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	C14orf80	Q86SX3	495 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	RAB11FIP4	Q86YS3	637 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	SRRM1	Q8IYB3	904 aa	Known RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	ZNF713	Q8N859	430 aa	Predicted RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	FANCB	Q8NB91	859 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	CCDC12	Q8WUD4	166 aa	Predicted RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	ZNF669	Q96BR6	464 aa	Predicted RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	DYDC2	Q96IM9	177 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	TCEANC2	Q96MN5	208 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	NDC1	Q9BTX1	674 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	SLC29A3	Q9BZD2	475 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	PXMP2	Q9NR77	195 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	POLG2	Q9UHN1	485 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	FEZ2	Q9UHY8	353 aa	Predicted RBP	5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792		Q9Y3F1	56 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	PCDHA9	Q9Y5H5	950 aa		5.23	□□□□□ -1.57
ZNF540-204	ENST00000586792	LCT	P09848	1927 aa		5.23	□□□□□ -1.57

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