RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 MMP8P22894 467 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 FCARP24071 287 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 GABRB2P47870 512 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 PGFP49763 221 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 SLC7A9P82251 487 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 KIF5AQ12840 1032 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 BSPRYQ5W0U4 402 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 POTEHQ6S545 545 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 H2AFVQ71UI9 128 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 RSRC2Q7L4I2 434 aaKnown RBP16.24■□□□□ 0.19
SS18-216ENST00000580751 KIAA1328Q86T90 577 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 PHF13Q86YI8 300 aaPredicted RBP16.24■□□□□ 0.19
SS18-216ENST00000580751 CELF5Q8N6W0 485 aaKnown RBP16.24■□□□□ 0.19
SS18-216ENST00000580751 CLEC4CQ8WTT0 213 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 UBE2Q2Q8WVN8 375 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 NDRG1Q92597 394 aaKnown RBP16.24■□□□□ 0.19
SS18-216ENST00000580751 FGF14Q92915 247 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 ELSPBP1Q96BH3 223 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 FAM149B1Q96BN6 582 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 SLC22A12Q96S37 553 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 KCNK12Q9HB15 430 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 ABCC13Q9NSE7 274 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 OLA1Q9NTK5 396 aaKnown RBP16.24■□□□□ 0.19
SS18-216ENST00000580751 TDP1Q9NUW8 608 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 ASNSD1Q9NWL6 643 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 OSER1Q9NX31 292 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 TJP2Q9UDY2 1190 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 STRIP2Q9ULQ0 834 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 ARHGAP26Q9UNA1 814 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 REXO2Q9Y3B8 237 aaKnown RBP16.24■□□□□ 0.19
SS18-216ENST00000580751 NUMBLQ9Y6R0 609 aa16.24■□□□□ 0.19
SS18-216ENST00000580751 A0A0A6YYK5 440 aaPredicted RBP16.23■□□□□ 0.19
SS18-216ENST00000580751 ANKRD62A6NC57 917 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 KIF2AO00139 706 aaPredicted RBP16.23■□□□□ 0.19
SS18-216ENST00000580751 HSF2BPO75031 334 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 PRAMEF12O95522 483 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 CALB1P05937 261 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 GLI1P08151 1106 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 MBL2P11226 248 aaPredicted RBP16.23■□□□□ 0.19
SS18-216ENST00000580751 ATP5C1P36542 298 aaKnown RBP16.23■□□□□ 0.19
SS18-216ENST00000580751 SCNN1AP37088 669 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 TCEAL1Q15170 157 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 EFHC1Q5JVL4 640 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 C10orf120Q5SQS8 335 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 OR6B2Q6IFH4 312 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 ACAD10Q6JQN1 1059 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 PARM1Q6UWI2 310 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 OLFML1Q6UWY5 402 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 MMS22LQ6ZRQ5 1243 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 FAM183BPQ6ZVS7 135 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 BEND5Q7L4P6 421 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 DDX42Q86XP3 938 aaKnown RBP eCLIP16.23■□□□□ 0.19
SS18-216ENST00000580751 RNF10Q8N5U6 811 aaKnown RBP16.23■□□□□ 0.19
SS18-216ENST00000580751 ACRBPQ8NEB7 543 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 RNF139Q8WU17 664 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 DEPDC1BQ8WUY9 529 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 USP13Q92995 863 aaPredicted RBP16.23■□□□□ 0.19
SS18-216ENST00000580751 CYP2S1Q96SQ9 504 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 C11orf70Q9BRQ4 267 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 DESI2Q9BSY9 194 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 MYO1AQ9UBC5 1043 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 DNMT3LQ9UJW3 386 aa16.23■□□□□ 0.19
SS18-216ENST00000580751 TMEM253P0C7T8 217 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 TCF3P15923 654 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 VIPR2P41587 438 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 YWHAZP63104 245 aaKnown RBP16.22■□□□□ 0.19
SS18-216ENST00000580751 SLC6A3Q01959 620 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 C1QBPQ07021 282 aaKnown RBP16.22■□□□□ 0.19
SS18-216ENST00000580751 ARHGAP29Q52LW3 1261 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 TANGO2Q6ICL3 276 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 SLC26A9Q7LBE3 791 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 XYLT1Q86Y38 959 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 RNF135Q8IUD6 432 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 REXO1L1PQ8IX06 675 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 NECAB3Q96P71 396 aaPredicted RBP16.22■□□□□ 0.19
SS18-216ENST00000580751 KXD1Q9BQD3 176 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 RNF38Q9H0F5 515 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 SMG9Q9H0W8 520 aaKnown RBP16.22■□□□□ 0.19
SS18-216ENST00000580751 POPDC2Q9HBU9 364 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 ADAM22Q9P0K1 906 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 WDR35Q9P2L0 1181 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 CPQQ9Y646 472 aa16.22■□□□□ 0.19
SS18-216ENST00000580751 HELZP42694 1942 aaKnown RBP16.21■□□□□ 0.19
SS18-216ENST00000580751 HEPACAM2A8MVW5 462 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 CAPN9O14815 690 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 FTLP02792 175 aaPredicted RBP16.21■□□□□ 0.19
SS18-216ENST00000580751 ASGR2P07307 311 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 IFI16Q16666 785 aaKnown RBP16.21■□□□□ 0.19
SS18-216ENST00000580751 FAM102AQ5T9C2 384 aaPredicted RBP16.21■□□□□ 0.19
SS18-216ENST00000580751 HFE2Q6ZVN8 426 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 MON1BQ7L1V2 547 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 BPIFB1Q8TDL5 484 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 CTNNBL1Q8WYA6 563 aaPredicted RBP16.21■□□□□ 0.19
SS18-216ENST00000580751 EDEM1Q92611 657 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 CCL26Q9Y258 94 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 CUL9Q8IWT3 2517 aa16.21■□□□□ 0.19
SS18-216ENST00000580751 FAM170AA1A519 330 aa16.2■□□□□ 0.18
SS18-216ENST00000580751 TBX18O95935 607 aa16.2■□□□□ 0.18
SS18-216ENST00000580751 NCAM1P13591 858 aa16.2■□□□□ 0.18
SS18-216ENST00000580751 PSMC3P17980 439 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms