RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZNF512Q96ME7 567 aaPredicted RBP16.85■□□□□ 0.29
SS18-211ENST00000578954 TBCBQ99426 244 aa16.85■□□□□ 0.29
SS18-211ENST00000578954 OLA1Q9NTK5 396 aaKnown RBP16.85■□□□□ 0.29
SS18-211ENST00000578954 DZANK1Q9NVP4 752 aa16.85■□□□□ 0.29
SS18-211ENST00000578954 HYOU1Q9Y4L1 999 aa16.85■□□□□ 0.29
SS18-211ENST00000578954 CCDC66A2RUB6 948 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 DDX3YO15523 660 aaKnown RBP16.84■□□□□ 0.29
SS18-211ENST00000578954 RFPL2O75678 378 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 RNF8O76064 485 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 ATP1A1P05023 1023 aaKnown RBP16.84■□□□□ 0.29
SS18-211ENST00000578954 RALAP11233 206 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 RARGP13631 454 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 CASQ1P31415 396 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 SULT1E1P49888 294 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 PEX5P50542 639 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 TAS2R40P59535 323 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 AMPD2Q01433 879 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 TAF12Q16514 161 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 PABPC1LQ4VXU2 614 aaKnown RBP16.84■□□□□ 0.29
SS18-211ENST00000578954 SH3PXD2AQ5TCZ1 1133 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 KLHDC10Q6PID8 442 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 POLNQ7Z5Q5 900 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 TAC4Q86UU9 113 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 EFHBQ8N7U6 833 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 LEMD2Q8NC56 503 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 ZNF707Q96C28 371 aaPredicted RBP16.84■□□□□ 0.29
SS18-211ENST00000578954 CDK5RAP1Q96SZ6 601 aaKnown RBP16.84■□□□□ 0.29
SS18-211ENST00000578954 PRKD2Q9BZL6 878 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 TRPM5Q9NZQ8 1165 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 CALCOCO1Q9P1Z2 691 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 PCDHA3Q9Y5H8 950 aa16.84■□□□□ 0.29
SS18-211ENST00000578954 M0QYT0 321 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 SOX1O00570 391 aaPredicted RBP16.83■□□□□ 0.28
SS18-211ENST00000578954 ENC1O14682 589 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 CCL16O15467 120 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 IRAK2O43187 625 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 NCK2O43639 380 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 OBSL1O75147 1896 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 XYLBO75191 536 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 TRUB2O95900 331 aaKnown RBP16.83■□□□□ 0.28
SS18-211ENST00000578954 F9P00740 461 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 PRLRP16471 622 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 MIPP30301 263 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 RDXP35241 583 aaKnown RBP16.83■□□□□ 0.28
SS18-211ENST00000578954 ATP11AP98196 1134 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 HYAL1Q12794 435 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 NNTQ13423 1086 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 RPS6KA1Q15418 735 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 TCEAL5Q5H9L2 206 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 DAB2IPQ5VWQ8 1189 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 CYP4V2Q6ZWL3 525 aaPredicted RBP16.83■□□□□ 0.28
SS18-211ENST00000578954 RHOT1Q8IXI2 618 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 KIF18AQ8NI77 898 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 RNF139Q8WU17 664 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 KRT35Q92764 455 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 ANAPC1Q9H1A4 1944 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 PRDM12Q9H4Q4 367 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 SFXN1Q9H9B4 322 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 WDR6Q9NNW5 1121 aaKnown RBP16.83■□□□□ 0.28
SS18-211ENST00000578954 SNX12Q9UMY4 172 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 PACSIN2Q9UNF0 486 aaPredicted RBP16.83■□□□□ 0.28
SS18-211ENST00000578954 USTQ9Y2C2 406 aa16.83■□□□□ 0.28
SS18-211ENST00000578954 TLR5O60602 858 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 FGF19O95750 216 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 GLP2RO95838 553 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 OLFM2O95897 454 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 OAS1P00973 400 aaKnown RBP16.82■□□□□ 0.28
SS18-211ENST00000578954 TCF4P15884 667 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 PFKLP17858 780 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 IL1R2P27930 398 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 CDC25CP30307 473 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 GTF2F1P35269 517 aaKnown RBP eCLIP16.82■□□□□ 0.28
SS18-211ENST00000578954 GRIN2CQ14957 1233 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 HADHQ16836 314 aaKnown RBP16.82■□□□□ 0.28
SS18-211ENST00000578954 CDO1Q16878 200 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 RAB6CQ53S08 254 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 GAREM2Q75VX8 874 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 TADA2BQ86TJ2 420 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 HS6ST3Q8IZP7 471 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 UBL4BQ8N7F7 174 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 NTAN1Q96AB6 310 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 SERPINB11Q96P15 392 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 PEBP4Q96S96 227 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 RAB6CQ9H0N0 254 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 ASAH2Q9NR71 780 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 PIGVQ9NUD9 493 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 USP18Q9UMW8 372 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 MTCH2Q9Y6C9 303 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 DENND4CQ5VZ89 1909 aa16.82■□□□□ 0.28
SS18-211ENST00000578954 NOTCH4Q99466 2003 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 CES2O00748 559 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 KRT7P08729 469 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 PTPN2P17706 415 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 TCP1P17987 556 aaKnown RBP16.81■□□□□ 0.28
SS18-211ENST00000578954 GABRR2P28476 465 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 MARCKSL1P49006 195 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 CXCR3P49682 368 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 AIF1P55008 147 aa16.81■□□□□ 0.28
SS18-211ENST00000578954 RBM10P98175 930 aaKnown RBP16.81■□□□□ 0.28
SS18-211ENST00000578954 DEUP1Q05D60 604 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms