RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 CNTN3Q9P232 1028 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 RNF14Q9UBS8 474 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 AFF4Q9UHB7 1163 aaKnown RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 GTF3C4Q9UKN8 822 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 SNX12Q9UMY4 172 aa10.7□□□□□ -0.7
SS18-207ENST00000577636 TIMM13Q9Y5L4 95 aaPredicted RBP10.7□□□□□ -0.7
SS18-207ENST00000577636 SPECC1L-ADORA2AF8WAN1 911 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 CHADO15335 359 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 PAEPP09466 180 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 CD19P15391 556 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 CHRNB2P17787 502 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 CYP3A5P20815 502 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 RPL9P32969 192 aaKnown RBP10.69□□□□□ -0.7
SS18-207ENST00000577636 ASPAP45381 313 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 CDR1P51861 262 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 DUSP4Q13115 394 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 DGKKQ5KSL6 1271 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 STXBP5Q5T5C0 1151 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 ALKAL1Q6UXT8 129 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 TMEM130Q8N3G9 435 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 LEMD2Q8NC56 503 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 TMEM35BQ8NCS4 154 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 TPCN2Q8NHX9 752 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 E2F7Q96AV8 911 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 ELMO3Q96BJ8 720 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 SUSD3Q96L08 255 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 ZNF518BQ9C0D4 1074 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 THAP2Q9H0W7 228 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 ATXN3LQ9H3M9 355 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 TRPV4Q9HBA0 871 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 RXFP3Q9NSD7 469 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 UVRAGQ9P2Y5 699 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 LCMT1Q9UIC8 334 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 AMFRQ9UKV5 643 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 KIAA1257Q9ULG3 409 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 SLC27A5Q9Y2P5 690 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 ZFHX4Q86UP3 3567 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 F5P12259 2224 aa10.69□□□□□ -0.7
SS18-207ENST00000577636 ACACBO00763 2458 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 MYBPHLA2RUH7 354 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 ARNTLO00327 626 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 FOXD2O60548 495 aaPredicted RBP10.68□□□□□ -0.7
SS18-207ENST00000577636 CALB1P05937 261 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 KCNE1P15382 129 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 PMLP29590 882 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 CTHP32929 405 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 ALDH1A3P47895 512 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 ZNF132P52740 706 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 EPHB3P54753 998 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 HADHBP55084 474 aaKnown RBP10.68□□□□□ -0.7
SS18-207ENST00000577636 AMPD2Q01433 879 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 YWHAHQ04917 246 aaPredicted RBP10.68□□□□□ -0.7
SS18-207ENST00000577636 TCEAL1Q15170 157 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 SV2CQ496J9 727 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 CFAP221Q4G0U5 840 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 XKR4Q5GH76 650 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 STPG1Q5TH74 334 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 MEI1Q5TIA1 1274 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 C11orf63Q6NUN7 778 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 KBTBD6Q86V97 674 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 WDR5BQ86VZ2 330 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 UBL4BQ8N7F7 174 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 VCPIP1Q96JH7 1222 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 LRRC3BQ96PB8 259 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 OSBPL9Q96SU4 736 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 PCDHB18PQ96TA0 734 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 MRPL47Q9HD33 250 aaKnown RBP10.68□□□□□ -0.7
SS18-207ENST00000577636 SIX4Q9UIU6 781 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 PCDHB8Q9UN66 801 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 YIPF1Q9Y548 306 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 SCINQ9Y6U3 715 aa10.68□□□□□ -0.7
SS18-207ENST00000577636 EPG5Q9HCE0 2579 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 GRID2IPA4D2P6 1211 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 MIF4GDA9UHW6 222 aaKnown RBP10.67□□□□□ -0.7
SS18-207ENST00000577636 FANCGO15287 622 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 RPP40O75818 363 aaKnown RBP10.67□□□□□ -0.7
SS18-207ENST00000577636 SOAT2O75908 522 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 FTCDO95954 541 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 CYP1A2P05177 515 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 EPHA5P54756 1037 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 SNX16P57768 344 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 CENPCQ03188 943 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 TNK2Q07912 1038 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 STILQ15468 1287 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 ZNF394Q53GI3 561 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 SGO2Q562F6 1265 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 TEX35Q5T0J7 233 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 GPR158Q5T848 1215 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 NAA35Q5VZE5 725 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 C1orf228Q6PIY5 440 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 DSTYKQ6XUX3 929 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 RALGPS2Q86X27 583 aaPredicted RBP10.67□□□□□ -0.7
SS18-207ENST00000577636 UBR7Q8N806 425 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 ZNF606Q8WXB4 792 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 MSANTD3Q96H12 275 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 TMEM176AQ96HP8 235 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 PBKQ96KB5 322 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 CAPZA3Q96KX2 299 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 NUP85Q9BW27 656 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 NT5C1AQ9BXI3 368 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms