RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ORC1Q13415 861 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 HYIQ5T013 277 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 CCDC83Q8IWF9 413 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 NUP93Q8N1F7 819 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 SNIP1Q8TAD8 396 aaKnown RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 MYCBPAPQ8TBZ2 947 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 OVCA2Q8WZ82 227 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 KCNN1Q92952 543 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 BHMTQ93088 406 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 SKA1Q96BD8 255 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 CALML4Q96GE6 196 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 INTS4Q96HW7 963 aaKnown RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 HPDLQ96IR7 371 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 ANKRD36BP1Q96IX9 119 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 TMX3Q96JJ7 454 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 ZFRQ96KR1 1074 aaKnown RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 HNRNPABQ99729 332 aaKnown RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 ELOVL4Q9GZR5 314 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 MKRN2Q9H000 416 aaKnown RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 CD248Q9HCU0 757 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 CRTAC1Q9NQ79 661 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 RBAKQ9NYW8 714 aaPredicted RBP11.74□□□□□ -0.53
VPS53-207ENST00000570510 EXOC7Q9UPT5 735 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 GTF3C3Q9Y5Q9 886 aa11.74□□□□□ -0.53
VPS53-207ENST00000570510 HECTD1Q9ULT8 2610 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 VWA3AA6NCI4 1184 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 KCNJ18B7U540 433 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 NPC1O15118 1278 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 ITGAVP06756 1048 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 C6P13671 934 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 PDCP20941 246 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 GNL1P36915 607 aaPredicted RBP11.73□□□□□ -0.53
VPS53-207ENST00000570510 GRIA4P48058 902 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 UCNP55089 124 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 TMPRSS3P57727 454 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 PTPRJQ12913 1337 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 ARHGAP40Q5TG30 622 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 HES3Q5TGS1 186 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 CRELD2Q6UXH1 353 aaPredicted RBP11.73□□□□□ -0.53
VPS53-207ENST00000570510 PRICKLE2Q7Z3G6 844 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 SPACA3Q8IXA5 215 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 OR6B3Q8NGW1 331 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 SAAL1Q96ER3 474 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 WBP1Q96G27 269 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 NAF1Q96HR8 494 aaKnown RBP11.73□□□□□ -0.53
VPS53-207ENST00000570510 CNDP2Q96KP4 475 aaKnown RBP11.73□□□□□ -0.53
VPS53-207ENST00000570510 ANAPC1Q9H1A4 1944 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 PCED1AQ9H1Q7 454 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 CCSER2Q9H7U1 834 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 MYOFQ9NZM1 2061 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 STYXL1Q9Y6J8 313 aa11.73□□□□□ -0.53
VPS53-207ENST00000570510 ATP8B3O60423 1300 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 MYO18BQ8IUG5 2567 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 H0Y8X5 98 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 BRINP1O60477 761 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 PRPF6O94906 941 aaKnown RBP11.72□□□□□ -0.53
VPS53-207ENST00000570510 CLSTN1O94985 981 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 TNNC2P02585 160 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 UBA7P41226 1012 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 ZNF131P52739 623 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 CLDN6P56747 220 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 CUL4AQ13619 759 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 LY6DQ14210 128 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 RTP5Q14D33 572 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 IL17AQ16552 155 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 USP49Q70CQ1 688 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 FMNL3Q8IVF7 1028 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 BRSK2Q8IWQ3 736 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 SYCP3Q8IZU3 236 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 ZNF248Q8NDW4 579 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 MED10Q9BTT4 135 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 ACE2Q9BYF1 805 aaPredicted RBP11.72□□□□□ -0.53
VPS53-207ENST00000570510 MTMR12Q9C0I1 747 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 TM9SF3Q9HD45 589 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 PLK2Q9NYY3 685 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 HEMK1Q9Y5R4 338 aaPredicted RBP11.72□□□□□ -0.53
VPS53-207ENST00000570510 CFAP46Q8IYW2 2715 aa11.72□□□□□ -0.53
VPS53-207ENST00000570510 KNTC1P50748 2209 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 FSBPO95073 299 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 EPHX1P07099 455 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 PTPN1P18031 435 aaKnown RBP11.71□□□□□ -0.53
VPS53-207ENST00000570510 WARSP23381 471 aaKnown RBP11.71□□□□□ -0.53
VPS53-207ENST00000570510 TUBP50607 506 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 BCAT1P54687 386 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 DNAJC3Q13217 504 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 HTR3DQ70Z44 454 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 GATAD2AQ86YP4 633 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 KBTBD7Q8WVZ9 684 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 SNX21Q969T3 373 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 DUSP9Q99956 384 aaKnown RBP11.71□□□□□ -0.53
VPS53-207ENST00000570510 TRIM9Q9C026 710 aa11.71□□□□□ -0.53
VPS53-207ENST00000570510 C6orf106Q9H6K1 298 aaPredicted RBP11.71□□□□□ -0.53
VPS53-207ENST00000570510 SPTA1P02549 2419 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 GOLGA8IPA6NC78 632 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 GOLGA8JA6NMD2 632 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 TLR5O60602 858 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 NTRK1P04629 796 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 GLDCP23378 1020 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 ADSSP30520 456 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 CSRP3P50461 194 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms