RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NSUN7Q8NE18 718 aaKnown RBP19.18■□□□□ 0.66
CLK3-227ENST00000570296 ZNF578Q96N58 590 aaPredicted RBP19.18■□□□□ 0.66
CLK3-227ENST00000570296 ITGA11Q9UKX5 1188 aa19.18■□□□□ 0.66
CLK3-227ENST00000570296 TLN1Q9Y490 2541 aaKnown RBP19.18■□□□□ 0.66
CLK3-227ENST00000570296 NPHP3-ACAD11A0A0J9YXS1 232 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 ANKRD63C9JTQ0 380 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 SYNCRIPO60506 623 aaKnown RBP19.17■□□□□ 0.66
CLK3-227ENST00000570296 CISD3P0C7P0 127 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 TUBP50607 506 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 TFAMQ00059 246 aaKnown RBP19.17■□□□□ 0.66
CLK3-227ENST00000570296 HYIQ5T013 277 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 SKAP1Q86WV1 359 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 CXorf38Q8TB03 319 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 CACTINQ8WUQ7 758 aaKnown RBP19.17■□□□□ 0.66
CLK3-227ENST00000570296 RFFLQ8WZ73 363 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 TSC1Q92574 1164 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 GTF3C6Q969F1 213 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 PCED1BQ96HM7 432 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 HIC2Q96JB3 615 aa19.17■□□□□ 0.66
CLK3-227ENST00000570296 FOXP1Q9H334 677 aaPredicted RBP19.17■□□□□ 0.66
CLK3-227ENST00000570296 C6orf106Q9H6K1 298 aaPredicted RBP19.17■□□□□ 0.66
CLK3-227ENST00000570296 CBX4O00257 560 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 TRAK2O60296 914 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 PLA2G4BP0C869 781 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 PLCG1P19174 1290 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 GLDCP23378 1020 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 YWHAQP27348 245 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 ARSHQ5FYA8 562 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 SNX30Q5VWJ9 437 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 LAYNQ6UX15 382 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 LIMS2Q7Z4I7 341 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 MYCT1Q8N699 235 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 NECAB1Q8N987 351 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 MYCBPAPQ8TBZ2 947 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 KBTBD7Q8WVZ9 684 aa19.16■□□□□ 0.66
CLK3-227ENST00000570296 THAP10Q9P2Z0 257 aaPredicted RBP19.16■□□□□ 0.66
CLK3-227ENST00000570296 ARID1BQ8NFD5 2236 aaPredicted RBP19.16■□□□□ 0.66
CLK3-227ENST00000570296 LMO2P25791 158 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 CD27P26842 260 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 ZNF131P52739 623 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 COPAP53621 1224 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 GTF2BQ00403 316 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 VAC14Q08AM6 782 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 ANKRD1Q15327 319 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 E2F5Q15329 346 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 ZRSR1Q15695 479 aaKnown RBP19.15■□□□□ 0.66
CLK3-227ENST00000570296 KCNT1Q5JUK3 1230 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 HTR3DQ70Z44 454 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 ADAT2Q7Z6V5 191 aaKnown RBP19.15■□□□□ 0.66
CLK3-227ENST00000570296 FAM124AQ86V42 546 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 GATAD2AQ86YP4 633 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 DHX40Q8IX18 779 aaKnown RBP19.15■□□□□ 0.66
CLK3-227ENST00000570296 CSGALNACT2Q8N6G5 542 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 DCBLD1Q8N8Z6 715 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 FBXO32Q969P5 355 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 WBP2Q969T9 261 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 NAF1Q96HR8 494 aaKnown RBP19.15■□□□□ 0.66
CLK3-227ENST00000570296 REEP2Q9BRK0 252 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 PARVGQ9HBI0 331 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.15■□□□□ 0.662e-7■■■■■ 93.2
CLK3-227ENST00000570296 NOL7Q9UMY1 257 aaKnown RBP19.15■□□□□ 0.66
CLK3-227ENST00000570296 CLCA2Q9UQC9 943 aa19.15■□□□□ 0.66
CLK3-227ENST00000570296 HEMK1Q9Y5R4 338 aaPredicted RBP19.15■□□□□ 0.66
CLK3-227ENST00000570296 TISP43B9A030 160 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 JAK2O60674 1132 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 RTN3O95197 1032 aaPredicted RBP19.14■□□□□ 0.65
CLK3-227ENST00000570296 IRF1P10914 325 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 ACO1P21399 889 aaKnown RBP19.14■□□□□ 0.65
CLK3-227ENST00000570296 RBP5P82980 135 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 GUCY1B3Q02153 619 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 IFRD2Q12894 506 aaPredicted RBP19.14■□□□□ 0.65
CLK3-227ENST00000570296 TPGS1Q6ZTW0 290 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 ELF4Q99607 663 aaPredicted RBP19.14■□□□□ 0.65
CLK3-227ENST00000570296 CCSER2Q9H7U1 834 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 FBXO10Q9UK96 956 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 SLC27A6Q9Y2P4 619 aa19.14■□□□□ 0.65
CLK3-227ENST00000570296 NBPF19A0A087WUL8 3843 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 VILLO15195 856 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 YKT6O15498 198 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 GREM1O60565 184 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 FAM13AO94988 1023 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 ITGAVP06756 1048 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 ABCB4P21439 1286 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 PRPHP41219 470 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 CDH8P55286 799 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 C21orf59P57076 290 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 IL17AQ16552 155 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 NUP93Q8N1F7 819 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 SAP25Q8TEE9 199 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 UCMAQ8WVF2 138 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 BIRC7Q96CA5 298 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 ACE2Q9BYF1 805 aaPredicted RBP19.13■□□□□ 0.65
CLK3-227ENST00000570296 DPH1Q9BZG8 443 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 TRIM9Q9C026 710 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 FAM117AQ9C073 453 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 ELOVL4Q9GZR5 314 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 PTPRJQ12913 1337 aa19.13■□□□□ 0.65
CLK3-227ENST00000570296 USP9YO00507 2555 aaPredicted RBP19.13■□□□□ 0.65
CLK3-227ENST00000570296 TERTO14746 1132 aaKnown RBP19.12■□□□□ 0.65
CLK3-227ENST00000570296 TSPAN3O60637 253 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms