RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ACTL7BQ9Y614 415 aa9.1□□□□□ -0.95
LINC00558-201ENST00000569422 CCDC195A0A1B0GUA6 201 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 CLDN5O00501 218 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 TYROBPO43914 113 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 GABBR2O75899 941 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 IL4RP24394 825 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 IGFBP6P24592 240 aaPredicted RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 CYP2F1P24903 491 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 HOXA11P31270 313 aaPredicted RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 GABRB2P47870 512 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 SLC6A3Q01959 620 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 KLHL38Q2WGJ6 581 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 OLFML1Q6UWY5 402 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 PQLC3Q8N755 202 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 ANKLE1Q8NAG6 615 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 SLC2A14Q8TDB8 520 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 PTPRN2Q92932 1015 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 CYTH2Q99418 400 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 IQCGQ9H095 443 aaKnown RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 ACSS3Q9H6R3 686 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 GBA2Q9HCG7 927 aaPredicted RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 ZC3H7BQ9UGR2 993 aaKnown RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 SLC24A2Q9UI40 661 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 MRPL42Q9Y6G3 142 aaKnown RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 CXorf49A8MYA2 514 aaPredicted RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 MMP3P08254 477 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 CYP2C9P11712 490 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 AMPD1P23109 780 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 STIP1P31948 543 aaKnown RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 PCK1P35558 622 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 HDAC4P56524 1084 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 TBX4P57082 545 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 SARNPP82979 210 aaKnown RBP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 BNIP1Q12981 228 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 PDK4Q16654 411 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 DGKDQ16760 1214 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 SOWAHAQ2M3V2 549 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 GPR142Q7Z601 462 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 AGGF1Q8N302 714 aaeCLIP9.09□□□□□ -0.95
LINC00558-201ENST00000569422 DCAKDQ8WVC6 231 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 MECRQ9BV79 373 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 PRKAG3Q9UGI9 489 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 CHKBQ9Y259 395 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 C2CD2Q9Y426 696 aa9.09□□□□□ -0.95
LINC00558-201ENST00000569422 E2F8A0AVK6 867 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TRIM64CA6NLI5 447 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TRIM49D1C9J1S8 452 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 PRPF4O43172 522 aaKnown RBP eCLIP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 HOXA2O43364 376 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 METTL18O95568 372 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 GSTA1P08263 222 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 GNL1P36915 607 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 BEX3Q00994 111 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 NME3Q13232 169 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ACVR2BQ13705 512 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 FAM187BQ17R55 369 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ADGRD1Q6QNK2 874 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 MTDHQ86UE4 582 aaKnown RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TDRPQ86YL5 185 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 UNC5BQ8IZJ1 945 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 MPP5Q8N3R9 675 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 CCDC185Q8N715 623 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 BEST2Q8NFU1 509 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ADAM32Q8TC27 787 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TMEM40Q8WWA1 233 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 PGLYRP2Q96PD5 576 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 GCOM2Q9BZD3 368 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 USP29Q9HBJ7 922 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ETNK2Q9NVF9 386 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 IL1RAPL1Q9NZN1 696 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 SLC17A6Q9P2U8 582 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 EFR3BQ9Y2G0 817 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 SPTLC1O15269 473 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 MGRN1O60291 552 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 EDF1O60869 148 aaKnown RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TOP3BO95985 862 aaKnown RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 F7P08709 466 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 KITP10721 976 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 BGNP21810 368 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 PITX1P78337 314 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 INCA1Q0VD86 236 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 SLC10A2Q12908 348 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ACCSLQ4AC99 568 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 BOLA3Q53S33 107 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TAF1BQ53T94 588 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 FAM47CQ5HY64 1035 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 MROH9Q5TGP6 573 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 EGFLAMQ63HQ2 1017 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 DENND5BQ6ZUT9 1274 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 CTU1Q7Z7A3 348 aaKnown RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TRIM74Q86UV6 250 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TRIM73Q86UV7 250 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 KIRREL3Q8IZU9 778 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 CCNYQ8ND76 341 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 RFWD2Q8NHY2 731 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 NPLOC4Q8TAT6 608 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 KHSRPQ92945 711 aaKnown RBP eCLIP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 STAMBPL1Q96FJ0 436 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 NFKBIZQ9BYH8 718 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 SNX25Q9H3E2 840 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms