RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 VSTM4Q8IW00 320 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 DRC7Q8IY82 874 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 PDCD7Q8N8D1 485 aaKnown RBP12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 ZNF507Q8TCN5 953 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 TMEM174Q8WUU8 243 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 FCRL3Q96P31 734 aaPredicted RBP12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 MRPL44Q9H9J2 332 aaKnown RBP12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 CYP8B1Q9UNU6 501 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 TRAF3IP3Q9Y228 551 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 PCDHB5Q9Y5E4 795 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 PCDHB13Q9Y5F0 798 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 SLCO1B1Q9Y6L6 691 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 KNTC1P50748 2209 aa12.66□□□□□ -0.38
VPS9D1-207ENST00000568691 COL5A1P20908 1838 aaPredicted RBP12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 MYOFQ9NZM1 2061 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 GOLGA8CPA6NN73 597 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 PLK4O00444 970 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 CYB561D2O14569 222 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 HCRTO43612 131 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 CALUO43852 315 aaPredicted RBP12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 CILPO75339 1184 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 PPP1R37O75864 691 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 PLS3P13797 630 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 WASP42768 502 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 SNRPFP62306 86 aaKnown RBP12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 RAD51AP2Q09MP3 1159 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 SMARCB1Q12824 385 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 TRIM14Q14142 442 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 NR1I3Q14994 352 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 KNOP1Q1ED39 458 aaKnown RBP12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 ZPBP2Q6X784 338 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 ZSCAN30Q86W11 494 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 IRF2BP1Q8IU81 584 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 ETFBKMTQ8IXQ9 262 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 MYCT1Q8N699 235 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 SPATA18Q8TC71 538 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 SETD7Q8WTS6 366 aaKnown RBP12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 HPS3Q969F9 1004 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 IQCDQ96DY2 449 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 FIZ1Q96SL8 496 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 ACOX2Q99424 681 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 STRA6Q9BX79 667 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 RNF38Q9H0F5 515 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 ZHX3Q9H4I2 956 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 ARHGEF4Q9NR80 690 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 INTS13Q9NVM9 706 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 DNMT3LQ9UJW3 386 aa12.65□□□□□ -0.38
VPS9D1-207ENST00000568691 CABIN1Q9Y6J0 2220 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 A0A1W2PQC6 194 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 LGALS16A8MUM7 142 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 SLC16A3O15427 465 aaKnown RBP12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 CLDN3O15551 220 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 GCNT3O95395 438 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 APODP05090 189 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 ZNF883P0CG24 379 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 HDCP19113 662 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 PBX1P40424 430 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 EIF2DP41214 584 aaKnown RBP12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 GRIA2P42262 883 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 TNFRSF4P43489 277 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 COPB1P53618 953 aaKnown RBP12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 NCKAP1LP55160 1127 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 PPP2R3AQ06190 1150 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 SPECC1LQ69YQ0 1117 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 ZNF720Q7Z2F6 126 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 C1orf216Q8TAB5 229 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 SPIRE2Q8WWL2 714 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 DNASE2BQ8WZ79 361 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 SRRTQ9BXP5 876 aaKnown RBP12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 CLMPQ9H6B4 373 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 GAREM1Q9H706 876 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 RTN4Q9NQC3 1192 aaKnown RBP12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 TM7SF3Q9NS93 570 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 ZKSCAN5Q9Y2L8 839 aa12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 USP9XQ93008 2570 aaPredicted RBP12.64□□□□□ -0.39
VPS9D1-207ENST00000568691 TEX15Q9BXT5 2789 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 TRIM66O15016 1216 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 NRDCO43847 1150 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 OLFM2O95897 454 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 RPL13P26373 211 aaKnown RBP12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 CASP5P51878 434 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 SMTNP53814 917 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 USP46P62068 366 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 SLC39A4Q6P5W5 647 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 DHRS13Q6UX07 377 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 HS2ST1Q7LGA3 356 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 RGL4Q8IZJ4 473 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 GALNT15Q8N3T1 639 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 SPC24Q8NBT2 197 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 CCDC112Q8NEF3 446 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 NAP1L5Q96NT1 182 aaPredicted RBP12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 FGFBP2Q9BYJ0 223 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 ZDHHC5Q9C0B5 715 aa12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 FAM124BQ9H5Z6 455 aaPredicted RBP12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 UXTQ9UBK9 157 aaPredicted RBP12.63□□□□□ -0.39
VPS9D1-207ENST00000568691 K7ENM7 598 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 CETN3O15182 167 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 HOXB2P14652 356 aa12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 ACAT1P24752 427 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-207ENST00000568691 GTF2BQ00403 316 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms