RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 NMUR1Q9HB89 426 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.74■□□□□ 0.11
CLN3-236ENST00000568558 PCDHA5Q9Y5H7 936 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 PCNX2A6NKB5 2137 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 ASPMQ8IZT6 3477 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 A0A1W2PQF6 199 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 A0A1W2PQH9 124 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 MDM4O15151 490 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 CILPO75339 1184 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 RHOBTB3O94955 611 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 KIF20AO95235 890 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 PRR29P0C7W0 189 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 CEACAM1P13688 526 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 GCLMP48507 274 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 PPP3CAQ08209 521 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 UAP1L1Q3KQV9 507 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 SLC23A3Q6PIS1 610 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 TPGS1Q6ZTW0 290 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 INTS8Q75QN2 995 aaKnown RBP15.73■□□□□ 0.11
CLN3-236ENST00000568558 SPATA32Q96LK8 384 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 ACOX2Q99424 681 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 NIF3L1Q9GZT8 377 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 CD248Q9HCU0 757 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 CALCOCO1Q9P1Z2 691 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 WDR35Q9P2L0 1181 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 PILRBQ9UKJ0 227 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 NUDT5Q9UKK9 219 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 CKAP5Q14008 2032 aa15.73■□□□□ 0.11
CLN3-236ENST00000568558 FAM237AA0A1B0GTK4 181 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 AP5Z1O43299 807 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 RARGP13631 454 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 ENGP17813 658 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 CD58P19256 250 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 ITPKAP23677 461 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 HOXD12P35452 270 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 SYKP43405 635 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 KIF11P52732 1056 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 RPL6Q02878 288 aaKnown RBP15.72■□□□□ 0.11
CLN3-236ENST00000568558 ENPEPQ07075 957 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 SLC36A4Q6YBV0 504 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 Q6ZNB5 142 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 TOGARAM2Q6ZUX3 1019 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 CCDC186Q7Z3E2 898 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 FAM186BQ8IYM0 893 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 CHPFQ8IZ52 775 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 IPO4Q8TEX9 1081 aaKnown RBP15.72■□□□□ 0.11
CLN3-236ENST00000568558 CCDC47Q96A33 483 aaKnown RBP15.72■□□□□ 0.11
CLN3-236ENST00000568558 GABRG3Q99928 467 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 WASF3Q9UPY6 502 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 MAPK8IP1Q9UQF2 711 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 CHD6Q8TD26 2715 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 CFAP47Q6ZTR5 3102 aa15.72■□□□□ 0.11
CLN3-236ENST00000568558 CACNA1EQ15878 2313 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 IGHV1OR15-9A0A0B4J2B8 117 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 PRRT4C9JH25 899 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 PROS1P07225 676 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 KRT13P13646 458 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 NDUFV2P19404 249 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 MAPK8P45983 427 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 PLA2G4AP47712 749 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 DGKGP49619 791 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 PSEN1P49768 467 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 NDUFA8P51970 172 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 KRT85P78386 507 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 DPYDQ12882 1025 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 FOXC1Q12948 553 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 C10orf120Q5SQS8 335 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 PPP1R26Q5T8A7 1209 aaPredicted RBP15.71■□□□□ 0.11
CLN3-236ENST00000568558 SDE2Q6IQ49 451 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 KIAA1211LQ6NV74 962 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 SCD5Q86SK9 330 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 GUF1Q8N442 669 aaKnown RBP15.71■□□□□ 0.11
CLN3-236ENST00000568558 ZNF276Q8N554 614 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 DEFB124Q8NES8 71 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 DUSP16Q9BY84 665 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 MMRN2Q9H8L6 949 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 TMEM8AQ9HCN3 771 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 DNMT3LQ9UJW3 386 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 NAGPAQ9UK23 515 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 USP3Q9Y6I4 520 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 WDFY3Q8IZQ1 3526 aa15.71■□□□□ 0.11
CLN3-236ENST00000568558 STC2O76061 302 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 CFIP05156 583 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 CISD3P0C7P0 127 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 PSMC2P35998 433 aaKnown RBP15.7■□□□□ 0.1
CLN3-236ENST00000568558 ZNF33AQ06730 810 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 DUOXA1Q1HG43 343 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 ZCWPW2Q504Y3 356 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 TADA2BQ86TJ2 420 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 DEFB119Q8N690 84 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 CCDC150Q8NCX0 1101 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 CEP76Q8TAP6 659 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 P2RY11Q96G91 374 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 DNAI2Q9GZS0 605 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 PLK2Q9NYY3 685 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 CLIC5Q9NZA1 410 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 FBXO10Q9UK96 956 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 SLC6A14Q9UN76 642 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 CYP8B1Q9UNU6 501 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 ZDHHC9Q9Y397 364 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms