RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ACCSQ96QU6 501 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 ELOVL4Q9GZR5 314 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 MRPL44Q9H9J2 332 aaKnown RBP17.15■□□□□ 0.34
CLK3-223ENST00000568488 FTSJ1Q9UET6 329 aa17.15■□□□□ 0.34
CLK3-223ENST00000568488 TEX51A0A1B0GUA7 166 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 HNF1BP35680 557 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 IL9RQ01113 521 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 TEAD4Q15561 434 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 OR5B17Q8NGF7 314 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 C1orf216Q8TAB5 229 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 SCAMP5Q8TAC9 235 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 BAP1Q92560 729 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 AK8Q96MA6 479 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 KCNK16Q96T55 309 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 ARID3AQ99856 593 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 B3GNT5Q9BYG0 378 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 DPEP3Q9H4B8 488 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 INTS13Q9NVM9 706 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 PLK2Q9NYY3 685 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 ANKRD6Q9Y2G4 727 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 NME7Q9Y5B8 376 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 SLCO1B1Q9Y6L6 691 aa17.14■□□□□ 0.33
CLK3-223ENST00000568488 CAPN8A6NHC0 703 aa17.13■□□□□ 0.33
CLK3-223ENST00000568488 SLC26A4O43511 780 aa17.13■□□□□ 0.33
CLK3-223ENST00000568488 CISD3P0C7P0 127 aa17.13■□□□□ 0.33
CLK3-223ENST00000568488 CCT8P50990 548 aa17.13■□□□□ 0.33
CLK3-223ENST00000568488 TAF1BQ53T94 588 aaPredicted RBP17.13■□□□□ 0.33
CLK3-223ENST00000568488 L1TD1Q5T7N2 865 aaKnown RBP17.13■□□□□ 0.33
CLK3-223ENST00000568488 ARL6IP4Q66PJ3 421 aaKnown RBP17.13■□□□□ 0.33
CLK3-223ENST00000568488 HTR3DQ70Z44 454 aa17.13■□□□□ 0.33
CLK3-223ENST00000568488 LARP4BQ92615 738 aaKnown RBP17.13■□□□□ 0.33
CLK3-223ENST00000568488 DUSP9Q99956 384 aaKnown RBP17.13■□□□□ 0.33
CLK3-223ENST00000568488 PPP1R37O75864 691 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 PRPF6O94906 941 aaKnown RBP17.12■□□□□ 0.33
CLK3-223ENST00000568488 GCNT3O95395 438 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 GARTP22102 1010 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 IL12RB1P42701 662 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 CXADRP78310 365 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 DUOXA2Q1HG44 320 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 INAVAQ3KP66 663 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 SNX30Q5VWJ9 437 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 LAYNQ6UX15 382 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 CBWD1Q9BRT8 395 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 MED10Q9BTT4 135 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.12■□□□□ 0.331e-6■■■■■ 73.2
CLK3-223ENST00000568488 MARK1Q9P0L2 795 aa17.12■□□□□ 0.33
CLK3-223ENST00000568488 LSM7Q9UK45 103 aaKnown RBP17.12■□□□□ 0.33
CLK3-223ENST00000568488 A8MXQ7 604 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 H0Y8X5 98 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 PYCARD-AS1I3L0S3 204 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 TBX18O95935 607 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 TUBP50607 506 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 CDH8P55286 799 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 CCDC173Q0VFZ6 552 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 TARDBPQ13148 414 aaKnown RBP eCLIP17.11■□□□□ 0.333e-6■■■□□ 14.6
CLK3-223ENST00000568488 IGSF8Q969P0 613 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 STRA6Q9BX79 667 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 CLMPQ9H6B4 373 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 C6orf106Q9H6K1 298 aaPredicted RBP17.11■□□□□ 0.33
CLK3-223ENST00000568488 TM9SF3Q9HD45 589 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 DNMT3LQ9UJW3 386 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 KNL1Q8NG31 2342 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 PTPRJQ12913 1337 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 KNTC1P50748 2209 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 CABIN1Q9Y6J0 2220 aa17.11■□□□□ 0.33
CLK3-223ENST00000568488 MUC22E2RYF6 1773 aaPredicted RBP17.1■□□□□ 0.33
CLK3-223ENST00000568488 ENC1O14682 589 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 ARHGAP6O43182 974 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 PCDHGA12O60330 932 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 GREM1O60565 184 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 TLR5O60602 858 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 TACC1O75410 805 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 ZNF132P52740 706 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 SLC5A3P53794 718 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 TNNC1P63316 161 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 GOLGA8FQ08AF8 430 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 GOLGA8DPQ0D2H9 430 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 PCSK4Q6UW60 755 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 ADAT2Q7Z6V5 191 aaKnown RBP17.1■□□□□ 0.33
CLK3-223ENST00000568488 GPD1LQ8N335 351 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 B3GALNT2Q8NCR0 500 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 UCMAQ8WVF2 138 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 KLF16Q9BXK1 252 aaPredicted RBP17.1■□□□□ 0.33
CLK3-223ENST00000568488 THAP10Q9P2Z0 257 aaPredicted RBP17.1■□□□□ 0.33
CLK3-223ENST00000568488 PCDHB13Q9Y5F0 798 aa17.1■□□□□ 0.33
CLK3-223ENST00000568488 CBX4O00257 560 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 CST3P01034 146 aaPredicted RBP17.09■□□□□ 0.33
CLK3-223ENST00000568488 ZDHHC11BP0C7U3 371 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 PGFP49763 221 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 KCNC4Q03721 635 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 DNAJC3Q13217 504 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 SURF1Q15526 300 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 GEN1Q17RS7 908 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 GATAD2AQ86YP4 633 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 FGF11Q92914 225 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 SEL1LQ9UBV2 794 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 ATP8B3O60423 1300 aa17.09■□□□□ 0.33
CLK3-223ENST00000568488 PTPRQQ9UMZ3 2332 aa17.08■□□□□ 0.33
CLK3-223ENST00000568488 ZNF233A6NK53 670 aa17.08■□□□□ 0.32
CLK3-223ENST00000568488 NPC1O15118 1278 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms