RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FETUBQ9UGM5 382 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 SCN10AQ9Y5Y9 1956 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 A0A1W2PPM1 405 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 CFAP69A5D8W1 941 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 M0QZ92 97 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 CPP00450 1065 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 NPR3P17342 541 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 STX2P32856 288 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 NDUFV1P49821 464 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 STRADAQ7RTN6 431 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 PALM2Q8IXS6 379 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 DENND1AQ8TEH3 1009 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 TRIB2Q92519 343 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 LPPQ93052 612 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 CSPG4P5Q96PW8 444 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 GAD1Q99259 594 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 USP3Q9Y6I4 520 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 PRPF4O43172 522 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLN3-230ENST00000568076 SNX3O60493 162 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 KPNA6O60684 536 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 AVILO75366 819 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 FSBPO95073 299 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 OAS1P00973 400 aaKnown RBP21.06■□□□□ 0.96
CLN3-230ENST00000568076 INHBEP58166 350 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 ITIH4Q14624 930 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 MDH1BQ5I0G3 518 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 FAXCQ5TGI0 409 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 PPP1R21Q6ZMI0 780 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 CLEC20AQ6ZU45 233 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 FAM131BQ86XD5 332 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 C4orf33Q8N1A6 199 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 FAM149B1Q96BN6 582 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 SENP8Q96LD8 212 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 PAFAH2Q99487 392 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 SENP6Q9GZR1 1112 aaPredicted RBP21.06■□□□□ 0.96
CLN3-230ENST00000568076 DNAI2Q9GZS0 605 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 NSRP1Q9H0G5 558 aaKnown RBP21.06■□□□□ 0.96
CLN3-230ENST00000568076 CRTAC1Q9NQ79 661 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 ETNK2Q9NVF9 386 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 MFHAS1Q9Y4C4 1052 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 TEX264Q9Y6I9 313 aa21.06■□□□□ 0.96
CLN3-230ENST00000568076 FAM155AB1AL88 458 aaPredicted RBP21.05■□□□□ 0.96
CLN3-230ENST00000568076 TSHRP16473 764 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 FOXN2P32314 431 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 MRPS5P82675 430 aaKnown RBP21.05■□□□□ 0.96
CLN3-230ENST00000568076 SLC25A52Q3SY17 297 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 ADGRD1Q6QNK2 874 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 CCDC33Q8N5R6 958 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 CCDC110Q8TBZ0 833 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 SGSM3Q96HU1 749 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 MAGEB18Q96M61 343 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 FZD10Q9ULW2 581 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 GABRQQ9UN88 632 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 GOLGA6L7A0A1B0GV03 622 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 DNM1LO00429 736 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 DAB1O75553 588 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 ASMTLO95671 621 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 SULT1E1P49888 294 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 CLCNKBP51801 687 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 RABGGTBP53611 331 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 NUGGCQ68CJ6 796 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 NCBP2-AS2Q69YL0 99 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 BNIPLQ7Z465 357 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 C3orf58Q8NDZ4 430 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 KCTD13Q8WZ19 329 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 TGS1Q96RS0 853 aaKnown RBP21.05■□□□□ 0.96
CLN3-230ENST00000568076 DDX43Q9NXZ2 648 aaKnown RBP21.05■□□□□ 0.96
CLN3-230ENST00000568076 SENP1Q9P0U3 644 aa21.05■□□□□ 0.96
CLN3-230ENST00000568076 KBTBD13C9JR72 458 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 FAM163BP0C2L3 166 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 GOT1P17174 413 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 AMPD1P23109 780 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 ACTN3Q08043 901 aaPredicted RBP21.04■□□□□ 0.96
CLN3-230ENST00000568076 MGAT3Q09327 533 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 CBLBQ13191 982 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 KLHL38Q2WGJ6 581 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 DCAF6Q58WW2 860 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 SERINC5Q86VE9 423 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 ANKS4BQ8N8V4 417 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 MZB1Q8WU39 189 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 DCAKDQ8WVC6 231 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 NT5C3BQ969T7 300 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 SMC6Q96SB8 1091 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 ZIC5Q96T25 663 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 UPF3AQ9H1J1 476 aaKnown RBP21.04■□□□□ 0.96
CLN3-230ENST00000568076 AGO3Q9H9G7 860 aaKnown RBP21.04■□□□□ 0.96
CLN3-230ENST00000568076 ETNK1Q9HBU6 452 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 TMPRSS4Q9NRS4 437 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 SLC38A7Q9NVC3 462 aa21.04■□□□□ 0.96
CLN3-230ENST00000568076 TIMM13Q9Y5L4 95 aaPredicted RBP21.04■□□□□ 0.96
CLN3-230ENST00000568076 CCT8L1PA6NM43 557 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 TYROBPO43914 113 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 CAPN15O75808 1086 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 THP07101 528 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 MAGEA6P43360 314 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 SLC18A1P54219 525 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 MAP3K7CLP57077 242 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 SLC8A3P57103 927 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 YWHAZP63104 245 aaKnown RBP21.03■□□□□ 0.96
CLN3-230ENST00000568076 TRIM32Q13049 653 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms