RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SPACA7Q96KW9 195 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 EDEM2Q9BV94 578 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 CISHQ9NSE2 258 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 DNAJC17Q9NVM6 304 aaKnown RBP16.93■□□□□ 0.3
CLN3-229ENST00000567963 MARK1Q9P0L2 795 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 WDR35Q9P2L0 1181 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 NAGPAQ9UK23 515 aa16.93■□□□□ 0.3
CLN3-229ENST00000567963 LNP1A1A4G5 178 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 KHNYNO15037 678 aaKnown RBP16.92■□□□□ 0.3
CLN3-229ENST00000567963 STX10O60499 249 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 EPB41P11171 864 aaKnown RBP16.92■□□□□ 0.3
CLN3-229ENST00000567963 PRCPP42785 496 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 BYSLQ13895 437 aaKnown RBP16.92■□□□□ 0.3
CLN3-229ENST00000567963 MAP7D1Q3KQU3 841 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 GRAMD4Q6IC98 578 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 Q6ZNB5 142 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 LPCAT2Q7L5N7 544 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 CYP2U1Q7Z449 544 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 TADA2BQ86TJ2 420 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 MIB1Q86YT6 1006 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 FMR1NBQ8N0W7 255 aaPredicted RBP16.92■□□□□ 0.3
CLN3-229ENST00000567963 PGBD3Q8N328 593 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 SLC4A11Q8NBS3 891 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 UBXN6Q9BZV1 441 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 FAM124BQ9H5Z6 455 aaPredicted RBP16.92■□□□□ 0.3
CLN3-229ENST00000567963 CLIC5Q9NZA1 410 aa16.92■□□□□ 0.3
CLN3-229ENST00000567963 MBD1Q9UIS9 605 aaPredicted RBP16.92■□□□□ 0.3
CLN3-229ENST00000567963 CIZ1Q9ULV3 898 aaPredicted RBP16.92■□□□□ 0.3
CLN3-229ENST00000567963 CNOT1A5YKK6 2376 aaKnown RBP16.91■□□□□ 0.3
CLN3-229ENST00000567963 PLXND1Q9Y4D7 1925 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 PATE3B3GLJ2 98 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 MAP3K13O43283 966 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 STC2O76061 302 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 RALAP11233 206 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 NTSR1P30989 418 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 RAD23BP54727 409 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 COBLL1Q53SF7 1204 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 SPDYCQ5MJ68 293 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 N4BP2L1Q5TBK1 243 aaPredicted RBP16.91■□□□□ 0.3
CLN3-229ENST00000567963 TMEFF1Q8IYR6 380 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 TATDN2Q93075 761 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 GSDMAQ96QA5 445 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 ARID3AQ99856 593 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 RMND1Q9NWS8 449 aa16.91■□□□□ 0.3
CLN3-229ENST00000567963 C4orf47A7E2U8 309 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 PRRT4C9JH25 899 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 KCNK5O95279 499 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 CISD3P0C7P0 127 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 HOXB2P14652 356 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 GABRG2P18507 467 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 IRX4P78413 519 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 ZNF658Q5TYW1 1059 aaPredicted RBP16.9■□□□□ 0.3
CLN3-229ENST00000567963 EGFLAMQ63HQ2 1017 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 TOGARAM2Q6ZUX3 1019 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 PIGKQ92643 395 aa16.9■□□□□ 0.3
CLN3-229ENST00000567963 CDK5RAP1Q96SZ6 601 aaKnown RBP16.9■□□□□ 0.3
CLN3-229ENST00000567963 TPRP12270 2363 aaKnown RBP16.9■□□□□ 0.3
CLN3-229ENST00000567963 A0A1W2PQF6 199 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 CDX4O14627 284 aaPredicted RBP16.89■□□□□ 0.29
CLN3-229ENST00000567963 KLKB1P03952 638 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 WASP42768 502 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 PTGER3P43115 390 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 DGKGP49619 791 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 COG7P83436 770 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 FKBP3Q00688 224 aaKnown RBP16.89■□□□□ 0.29
CLN3-229ENST00000567963 CBWD6Q4V339 395 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 RAB41Q5JT25 222 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 CBWD3Q5JTY5 395 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 CBWD5Q5RIA9 395 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 ARHGAP17Q68EM7 881 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 ANKRD40Q6AI12 368 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 PIGZQ86VD9 579 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 ZC3H3Q8IXZ2 948 aaKnown RBP16.89■□□□□ 0.29
CLN3-229ENST00000567963 ANKRD52Q8NB46 1076 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 SPATA20Q8TB22 786 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 ACOX2Q99424 681 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 CD248Q9HCU0 757 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 TMEM74BQ9NUR3 256 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 PLK2Q9NYY3 685 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 FBXO10Q9UK96 956 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 ZNF510Q9Y2H8 683 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 COQ4Q9Y3A0 265 aa16.89■□□□□ 0.29
CLN3-229ENST00000567963 TNRC6BQ9UPQ9 1833 aaKnown RBP16.89■□□□□ 0.29
CLN3-229ENST00000567963 SLC16A3O15427 465 aaKnown RBP16.88■□□□□ 0.29
CLN3-229ENST00000567963 PMS1P54277 932 aaKnown RBP16.88■□□□□ 0.29
CLN3-229ENST00000567963 DCAF17Q5H9S7 520 aaPredicted RBP16.88■□□□□ 0.29
CLN3-229ENST00000567963 TCERG1LQ5VWI1 586 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 DAB2IPQ5VWQ8 1189 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 SDE2Q6IQ49 451 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 SYT12Q8IV01 421 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 CHPFQ8IZ52 775 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 ENGASEQ8NFI3 743 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 BHMTQ93088 406 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 P2RY11Q96G91 374 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 TSG101Q99816 390 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 GABRG3Q99928 467 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 EVLQ9UI08 416 aaPredicted RBP16.88■□□□□ 0.29
CLN3-229ENST00000567963 CEP192Q8TEP8 1941 aa16.88■□□□□ 0.29
CLN3-229ENST00000567963 ACACBO00763 2458 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms