RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 EBF1Q9UH73 591 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 GPR179Q6PRD1 2367 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 ZNF292O60281 2723 aa21.77■■□□□ 1.07
CLN3-219ENST00000565778 NEDD8-MDP1E9PL57 170 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 STC2O76061 302 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 KLF8O95600 359 aaPredicted RBP21.76■■□□□ 1.07
CLN3-219ENST00000565778 AFPP02771 609 aaKnown RBP21.76■■□□□ 1.07
CLN3-219ENST00000565778 PAEPP09466 180 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 CRY1Q16526 586 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 RSPO4Q2I0M5 234 aaPredicted RBP21.76■■□□□ 1.07
CLN3-219ENST00000565778 PM20D1Q6GTS8 502 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 KBTBD6Q86V97 674 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 NDRG1Q92597 394 aaKnown RBP21.76■■□□□ 1.07
CLN3-219ENST00000565778 KAT5Q92993 513 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 IPO9Q96P70 1041 aaKnown RBP21.76■■□□□ 1.07
CLN3-219ENST00000565778 DNAJC17Q9NVM6 304 aaKnown RBP21.76■■□□□ 1.07
CLN3-219ENST00000565778 STRIP2Q9ULQ0 834 aa21.76■■□□□ 1.07
CLN3-219ENST00000565778 RNF225M0QZC1 329 aaPredicted RBP21.75■■□□□ 1.07
CLN3-219ENST00000565778 O00370 1275 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 TYRP14679 529 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 KIR2DL1P43626 348 aaPredicted RBP21.75■■□□□ 1.07
CLN3-219ENST00000565778 MARSP56192 900 aaKnown RBP21.75■■□□□ 1.07
CLN3-219ENST00000565778 LMNB2Q03252 620 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 HSF5Q4G112 596 aaPredicted RBP21.75■■□□□ 1.07
CLN3-219ENST00000565778 PHTF2Q8N3S3 785 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 IL17RCQ8NAC3 791 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 TFAP2BQ92481 460 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 DCLK3Q9C098 648 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 SEMA4GQ9NTN9 838 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 MARCH2Q9P0N8 246 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 RWDD2AQ9UIY3 292 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 ZNF510Q9Y2H8 683 aa21.75■■□□□ 1.07
CLN3-219ENST00000565778 SLC12A8A0AV02 714 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 PRR5-ARHGAP8B1AHC4 643 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 SGK1O00141 431 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 TRIM24O15164 1050 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 LRP3O75074 770 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 ALDH1A2O94788 518 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 SETSIPP0DME0 302 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 SDHBP21912 280 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 ARHGAP8P85298 464 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 PUM1Q14671 1186 aaKnown RBP eCLIP21.74■■□□□ 1.07
CLN3-219ENST00000565778 CNGA2Q16280 664 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 USP39Q53GS9 565 aaKnown RBP21.74■■□□□ 1.07
CLN3-219ENST00000565778 EOGTQ5NDL2 527 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 C10orf76Q5T2E6 689 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 GRAMD4Q6IC98 578 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 ANO7Q6IWH7 933 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 LCLAT1Q6UWP7 414 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 Q6ZNB5 142 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 ARHGEF19Q8IW93 802 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 SIX6OS1Q8N1H7 587 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 BHMTQ93088 406 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 TPSD1Q9BZJ3 242 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 ZDHHC4Q9NPG8 344 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 INVSQ9Y283 1065 aa21.74■■□□□ 1.07
CLN3-219ENST00000565778 MYOFQ9NZM1 2061 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 DCLK1O15075 740 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 KLKB1P03952 638 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 LCP1P13796 627 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 CHKAP35790 457 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 ADIGQ0VDE8 80 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 TMEM92Q6UXU6 159 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 TERB1Q8NA31 727 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 RBBP8NLQ8NC74 664 aaPredicted RBP21.73■■□□□ 1.07
CLN3-219ENST00000565778 RNF139Q8WU17 664 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 KCTD13Q8WZ19 329 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 LOXL4Q96JB6 756 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 ZC3H10Q96K80 434 aaKnown RBP21.73■■□□□ 1.07
CLN3-219ENST00000565778 INTS2Q9H0H0 1204 aaKnown RBP21.73■■□□□ 1.07
CLN3-219ENST00000565778 ARRDC1-AS1Q9H2J1 176 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 POLMQ9NP87 494 aaPredicted RBP21.73■■□□□ 1.07
CLN3-219ENST00000565778 PLK2Q9NYY3 685 aa21.73■■□□□ 1.07
CLN3-219ENST00000565778 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.73■■□□□ 1.07
CLN3-219ENST00000565778 CACNG3O60359 315 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 CALCAP01258 141 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 BRD2P25440 801 aaKnown RBP21.72■■□□□ 1.07
CLN3-219ENST00000565778 CORO1AP31146 461 aaKnown RBP21.72■■□□□ 1.07
CLN3-219ENST00000565778 GBP1P32455 592 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 ANP32AP39687 249 aaKnown RBP21.72■■□□□ 1.07
CLN3-219ENST00000565778 RGS7P49802 495 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 GCNT1Q02742 428 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 STILQ15468 1287 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 CSRP2Q16527 193 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 BSPRYQ5W0U4 402 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 ERMP1Q7Z2K6 904 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 DGLUCYQ7Z3D6 616 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 ZNF513Q8N8E2 541 aaPredicted RBP21.72■■□□□ 1.07
CLN3-219ENST00000565778 KCNV2Q8TDN2 545 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 UBE2TQ9NPD8 197 aaPredicted RBP21.72■■□□□ 1.07
CLN3-219ENST00000565778 OLA1Q9NTK5 396 aaKnown RBP21.72■■□□□ 1.07
CLN3-219ENST00000565778 DLL3Q9NYJ7 618 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 MARK1Q9P0L2 795 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 MYO16Q9Y6X6 1858 aa21.72■■□□□ 1.07
CLN3-219ENST00000565778 M0QYV0 167 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 RHOBTB1O94844 696 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 KRT5P13647 590 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 DGKGP49619 791 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 FOXK2Q01167 660 aa21.71■■□□□ 1.07
CLN3-219ENST00000565778 ELF2Q15723 593 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms