RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GLUD1P00367 558 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 KRT1P04264 644 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 GLI1P08151 1106 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 RARAP10276 462 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 EPCAMP16422 314 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 PTPN7P35236 360 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 GJC1P36383 396 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 COILP38432 576 aaPredicted RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 OGDHQ02218 1023 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 DSG1Q02413 1049 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 YWHAHQ04917 246 aaPredicted RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 ELAVL2Q12926 359 aaKnown RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 CCNG2Q16589 344 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 CYP1B1Q16678 543 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 USP41Q3LFD5 358 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 OVOS1Q6IE37 1185 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 AADACL2Q6P093 401 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 EMBQ6PCB8 327 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 CCDC137Q6PK04 289 aaKnown RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 OLFML1Q6UWY5 402 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 C4orf50Q6ZRC1 276 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 SYDE1Q6ZW31 735 aaPredicted RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 SLC26A9Q7LBE3 791 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 CPNE8Q86YQ8 564 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 DCP1BQ8IZD4 617 aaKnown RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 FUKQ8N0W3 1084 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 SIX6OS1Q8N1H7 587 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 EMC1Q8N766 993 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 PRELID2Q8N945 189 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 C12orf50Q8NA57 414 aaPredicted RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 TTC13Q8NBP0 860 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 C3orf58Q8NDZ4 430 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 ATL2Q8NHH9 583 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 LPIN3Q9BQK8 851 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 PAAF1Q9BRP4 392 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 VN1R3Q9BXE9 311 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 B3GNT5Q9BYG0 378 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 FRMD8P1Q9BZ68 369 aaPredicted RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 ZWILCHQ9H900 591 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS39-207ENST00000563692 OGFRQ9NZT2 677 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 ADAM28Q9UKQ2 775 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 USP18Q9UMW8 372 aa9.33□□□□□ -0.92
VPS39-207ENST00000563692 TIMM13Q9Y5L4 95 aaPredicted RBP9.33□□□□□ -0.92
VPS39-207ENST00000563692 MYBPHLA2RUH7 354 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 LRRD1A4D1F6 860 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TULP2O00295 520 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 SYN3O14994 580 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TEX28O15482 410 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 HCRTO43612 131 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 HSF2BPO75031 334 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 SEC31AO94979 1220 aaKnown RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 ECEL1O95672 775 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TRUB2O95900 331 aaKnown RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 RALAP11233 206 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 SP100P23497 879 aaPredicted RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 KDELR1P24390 212 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 MIPP30301 263 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 PTPN9P43378 593 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TNNT3P45378 269 aaPredicted RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 BRCC3P46736 316 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 CLCN4P51793 760 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 DRG2P55039 364 aaKnown RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 MAP3K7CLP57077 242 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 YWHAZP63104 245 aaKnown RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 MRPS25P82663 173 aaKnown RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 ZNF252P-AS1Q0IIN9 211 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 NNTQ13423 1086 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 PDK2Q15119 407 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 CCDC14Q49A88 953 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TFDP3Q5H9I0 405 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 INTS6LQ5JSJ4 861 aaKnown RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 FAM171BQ6P995 826 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TMC5Q6UXY8 1006 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 SPOCD1Q6ZMY3 1216 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 CCDC149Q6ZUS6 474 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 PIGZQ86VD9 579 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 GPR65Q8IYL9 337 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 C12orf76Q8N812 135 aaPredicted RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 TDRD5Q8NAT2 981 aaKnown RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 CMASQ8NFW8 434 aaPredicted RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 SLC22A17Q8WUG5 538 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 RIN2Q8WYP3 895 aaPredicted RBP9.32□□□□□ -0.92
VPS39-207ENST00000563692 SMARCD1Q96GM5 515 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 PCED1BQ96HM7 432 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 SLITRK1Q96PX8 696 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TBCBQ99426 244 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 ERP44Q9BS26 406 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 TRIM62Q9BVG3 475 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 HEMGNQ9BXL5 484 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 VIPAS39Q9H9C1 493 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 CRTAC1Q9NQ79 661 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 CACNG4Q9UBN1 327 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 PCSK1NQ9UHG2 260 aa9.32□□□□□ -0.92
VPS39-207ENST00000563692 ATG2AQ2TAZ0 1938 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 I3L4J1 428 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CLDN5O00501 218 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 CAPN9O14815 690 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 TTI1O43156 1089 aa9.31□□□□□ -0.92
VPS39-207ENST00000563692 LILRB3O75022 631 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms