RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 KIAA1549LQ6ZVL6 1849 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 NEDD8-MDP1E9PL57 170 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 GREM1O60565 184 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 ALDH1A2O94788 518 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 SETSIPP0DME0 302 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 TIE1P35590 1138 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 FOXK2Q01167 660 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 PUM1Q14671 1186 aaKnown RBP eCLIP17.68■□□□□ 0.42
CLK3-210ENST00000563112 EOGTQ5NDL2 527 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 PM20D1Q6GTS8 502 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 GRAMD4Q6IC98 578 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 ETFBKMTQ8IXQ9 262 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 SIX6OS1Q8N1H7 587 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 ALLCQ8N6M5 410 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 UBA3Q8TBC4 463 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 KCNV2Q8TDN2 545 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 RMDN1Q96DB5 314 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 LOXL4Q96JB6 756 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 IPO9Q96P70 1041 aaKnown RBP17.68■□□□□ 0.42
CLK3-210ENST00000563112 BBS2Q9BXC9 721 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 ULBP1Q9BZM6 244 aa17.68■□□□□ 0.42
CLK3-210ENST00000563112 O00370 1275 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 FOXD2O60548 495 aaPredicted RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 STC2O76061 302 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 KLF8O95600 359 aaPredicted RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 ANP32AP39687 249 aaKnown RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 STILQ15468 1287 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 CRY1Q16526 586 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 RSPO4Q2I0M5 234 aaPredicted RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 USP39Q53GS9 565 aaKnown RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 LCLAT1Q6UWP7 414 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 TPGS1Q6ZTW0 290 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 RRAGAQ7L523 313 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 ERMP1Q7Z2K6 904 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 TRMT11Q7Z4G4 463 aaKnown RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 CREBRFQ8IUR6 639 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 TXNDC5Q8NBS9 432 aaKnown RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 LMO3Q8TAP4 145 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 POLMQ9NP87 494 aaPredicted RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 PARD6AQ9NPB6 346 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 OLA1Q9NTK5 396 aaKnown RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 DNAJC17Q9NVM6 304 aaKnown RBP17.67■□□□□ 0.42
CLK3-210ENST00000563112 MARK1Q9P0L2 795 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 MARCH2Q9P0N8 246 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 RWDD2AQ9UIY3 292 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 RALGAPA1Q6GYQ0 2036 aa17.67■□□□□ 0.42
CLK3-210ENST00000563112 DMXL1Q9Y485 3027 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 TULP2O00295 520 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 RHOBTB1O94844 696 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 HMBSP08397 361 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 TYRP14679 529 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 TGM1P22735 817 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 CHKAP35790 457 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 KIR2DL1P43626 348 aaPredicted RBP17.66■□□□□ 0.42
CLK3-210ENST00000563112 GCNT1Q02742 428 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 ADIGQ0VDE8 80 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 MESP2Q0VG99 397 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 ELF2Q15723 593 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 CNGA2Q16280 664 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 CSRP2Q16527 193 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 C10orf76Q5T2E6 689 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 EMC10Q5UCC4 262 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 ANO7Q6IWH7 933 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 Q6ZNB5 142 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 KBTBD6Q86V97 674 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 C11orf74Q86VG3 221 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 SFTPA1Q8IWL2 248 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 PHTF2Q8N3S3 785 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 TERB1Q8NA31 727 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 IL17RCQ8NAC3 791 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 RBBP8NLQ8NC74 664 aaPredicted RBP17.66■□□□□ 0.42
CLK3-210ENST00000563112 RNF139Q8WU17 664 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 KCTD13Q8WZ19 329 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 ZC3H10Q96K80 434 aaKnown RBP17.66■□□□□ 0.42
CLK3-210ENST00000563112 SEMA4GQ9NTN9 838 aa17.66■□□□□ 0.42
CLK3-210ENST00000563112 CACNA1AO00555 2505 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 SLC12A8A0AV02 714 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 CACNG3O60359 315 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 DGLUCYQ7Z3D6 616 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 RASSF3Q86WH2 238 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 ZNF513Q8N8E2 541 aaPredicted RBP17.65■□□□□ 0.42
CLK3-210ENST00000563112 MLKLQ8NB16 471 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 KAT5Q92993 513 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 CNOT6LQ96LI5 555 aaKnown RBP17.65■□□□□ 0.42
CLK3-210ENST00000563112 INTS2Q9H0H0 1204 aaKnown RBP17.65■□□□□ 0.42
CLK3-210ENST00000563112 CNGB3Q9NQW8 809 aa17.65■□□□□ 0.42
CLK3-210ENST00000563112 MYO18AQ92614 2054 aaKnown RBP17.65■□□□□ 0.42
CLK3-210ENST00000563112 ANTXRLA6NF34 631 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 M0QYV0 167 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 RNF225M0QZC1 329 aaPredicted RBP17.64■□□□□ 0.41
CLK3-210ENST00000563112 SGK1O00141 431 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 EPN2O95208 641 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 LCP1P13796 627 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 CORO1AP31146 461 aaKnown RBP17.64■□□□□ 0.41
CLK3-210ENST00000563112 GBP1P32455 592 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 DGKGP49619 791 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 TPD52L1Q16890 204 aaPredicted RBP17.64■□□□□ 0.41
CLK3-210ENST00000563112 PLK5Q496M5 336 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 PKDCCQ504Y2 493 aa17.64■□□□□ 0.41
CLK3-210ENST00000563112 SDE2Q6IQ49 451 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms