RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PIGKQ92643 395 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 CYFIP2Q96F07 1278 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 EEF2KMTQ96G04 330 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 HNRNPABQ99729 332 aaKnown RBP12.28□□□□□ -0.44
USP3-220ENST00000561381 DUSP9Q99956 384 aaKnown RBP12.28□□□□□ -0.44
USP3-220ENST00000561381 GOLPH3LQ9H4A5 285 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 POLMQ9NP87 494 aaPredicted RBP12.28□□□□□ -0.44
USP3-220ENST00000561381 CYLDQ9NQC7 956 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 BCCIPQ9P287 314 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP3-220ENST00000561381 DEC1Q9P2X7 70 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 SCML2Q9UQR0 700 aa12.28□□□□□ -0.44
USP3-220ENST00000561381 FAM237AA0A1B0GTK4 181 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 NEDD8-MDP1E9PL57 170 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 CDX4O14627 284 aaPredicted RBP12.27□□□□□ -0.45
USP3-220ENST00000561381 KHNYNO15037 678 aaKnown RBP12.27□□□□□ -0.45
USP3-220ENST00000561381 MAPK13O15264 365 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 CILPO75339 1184 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 ATP5C1P36542 298 aaKnown RBP12.27□□□□□ -0.45
USP3-220ENST00000561381 ZNF394Q53GI3 561 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 EGFLAMQ63HQ2 1017 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 TOGARAM2Q6ZUX3 1019 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 HTR3DQ70Z44 454 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 FAM186BQ8IYM0 893 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 PGBD3Q8N328 593 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 SEMA4DQ92854 862 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 P2RY11Q96G91 374 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 ACOX2Q99424 681 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 BBS2Q9BXC9 721 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 NT5C1AQ9BXI3 368 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 NIF3L1Q9GZT8 377 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 CYP3A43Q9HB55 503 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 TMEM74BQ9NUR3 256 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 DNAJC17Q9NVM6 304 aaKnown RBP12.27□□□□□ -0.45
USP3-220ENST00000561381 ANGPTL2Q9UKU9 493 aa12.27□□□□□ -0.45
USP3-220ENST00000561381 PRRT4C9JH25 899 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 KIF20AO95235 890 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 RARGP13631 454 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 KRT13P13646 458 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 TYRP14679 529 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 GABRG2P18507 467 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 NOVA1P51513 510 aaKnown RBP12.26□□□□□ -0.45
USP3-220ENST00000561381 ADAM9Q13443 819 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 NFIL3Q16649 462 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 ST3GAL2Q16842 350 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 ZCWPW2Q504Y3 356 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 PPP1R26Q5T8A7 1209 aaPredicted RBP12.26□□□□□ -0.45
USP3-220ENST00000561381 GRAMD4Q6IC98 578 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 KRBA2Q6ZNG9 492 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 INTS8Q75QN2 995 aaKnown RBP12.26□□□□□ -0.45
USP3-220ENST00000561381 LPCAT2Q7L5N7 544 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 SCD5Q86SK9 330 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 SMYD4Q8IYR2 804 aaPredicted RBP12.26□□□□□ -0.45
USP3-220ENST00000561381 DEFB119Q8N690 84 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 BHMTQ93088 406 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 SPACA7Q96KW9 195 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 IMPG2Q9BZV3 1241 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 GDPD2Q9HCC8 539 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP3-220ENST00000561381 PLK2Q9NYY3 685 aa12.26□□□□□ -0.45
USP3-220ENST00000561381 ATXN2Q99700 1313 aaKnown RBP12.26□□□□□ -0.45
USP3-220ENST00000561381 CHD8Q9HCK8 2581 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 PI4KAP42356 2102 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 ASCC3Q8N3C0 2202 aaKnown RBP12.25□□□□□ -0.45
USP3-220ENST00000561381 A0A1W2PQF6 199 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 CACNG3O60359 315 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 ZNF202O95125 648 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 HOXB2P14652 356 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 NTSR1P30989 418 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 PSMC2P35998 433 aaKnown RBP12.25□□□□□ -0.45
USP3-220ENST00000561381 KIF11P52732 1056 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 UAP1L1Q3KQV9 507 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 TRIM61Q5EBN2 209 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 C10orf120Q5SQS8 335 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 SH3PXD2AQ5TCZ1 1133 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 KIAA1211LQ6NV74 962 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 Q6ZNB5 142 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 GUF1Q8N442 669 aaKnown RBP12.25□□□□□ -0.45
USP3-220ENST00000561381 CCDC47Q96A33 483 aaKnown RBP12.25□□□□□ -0.45
USP3-220ENST00000561381 ARID3AQ99856 593 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 TMEM8AQ9HCN3 771 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 CD248Q9HCU0 757 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 PNPLA8Q9NP80 782 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 TMEM9BQ9NQ34 198 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 FSCN3Q9NQT6 498 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 CALCOCO1Q9P1Z2 691 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 DNMT3LQ9UJW3 386 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 NAGPAQ9UK23 515 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 STARD13Q9Y3M8 1113 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 PCDHA5Q9Y5H7 936 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 TNRC6BQ9UPQ9 1833 aaKnown RBP12.25□□□□□ -0.45
USP3-220ENST00000561381 PLXND1Q9Y4D7 1925 aa12.25□□□□□ -0.45
USP3-220ENST00000561381 A0A1W2PQ27 194 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 A0A1W2PQ64 194 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 A0A1W2PQD8 194 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 STC2O76061 302 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 KLKB1P03952 638 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 CISD3P0C7P0 127 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 TRIM21P19474 475 aaKnown RBP12.24□□□□□ -0.45
USP3-220ENST00000561381 ITPKAP23677 461 aa12.24□□□□□ -0.45
USP3-220ENST00000561381 RPL13P26373 211 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms