RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GZMAP12544 262 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 ATP5C1P36542 298 aaKnown RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 SCNN1AP37088 669 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 SNX16P57768 344 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 GFPT1Q06210 699 aaPredicted RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 GRM2Q14416 872 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 TSR1Q2NL82 804 aaKnown RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 RSRC2Q7L4I2 434 aaKnown RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 DEFB106AQ8N104 65 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 DQX1Q8TE96 717 aaKnown RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 PANX2Q96RD6 677 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 KLF16Q9BXK1 252 aaPredicted RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 ISCUQ9H1K1 167 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 NHEJ1Q9H9Q4 299 aaPredicted RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 POPDC2Q9HBU9 364 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 METTL5Q9NRN9 209 aaKnown RBP22.78■■□□□ 1.24
SNX1-210ENST00000560260 SFMBT1Q9UHJ3 866 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 DNMT3LQ9UJW3 386 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 TMEM59LQ9UK28 342 aa22.78■■□□□ 1.24
SNX1-210ENST00000560260 LEFTY2O00292 366 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 HSF2BPO75031 334 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 RTN2O75298 545 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 FTLP02792 175 aaPredicted RBP22.77■■□□□ 1.24
SNX1-210ENST00000560260 CALB1P05937 261 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 GLI1P08151 1106 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 TCF3P15923 654 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 RRM1P23921 792 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 MRE11P49959 708 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 YWHAZP63104 245 aaKnown RBP22.77■■□□□ 1.24
SNX1-210ENST00000560260 EFHC1Q5JVL4 640 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 OTUD1Q5VV17 481 aaPredicted RBP22.77■■□□□ 1.24
SNX1-210ENST00000560260 BEND5Q7L4P6 421 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 TAC4Q86UU9 113 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 VPS36Q86VN1 386 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 MIB1Q86YT6 1006 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 CELF5Q8N6W0 485 aaKnown RBP22.77■■□□□ 1.24
SNX1-210ENST00000560260 JOSD2Q8TAC2 188 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 GOLGA1Q92805 767 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 ADAM33Q9BZ11 813 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 NACA2Q9H009 215 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 KIF9Q9HAQ2 790 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 SPTLC3Q9NUV7 552 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 OBP2AQ9NY56 170 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 IGSF9Q9P2J2 1179 aa22.77■■□□□ 1.24
SNX1-210ENST00000560260 MYO10Q9HD67 2058 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 SCAMP3O14828 347 aaKnown RBP22.76■■□□□ 1.23
SNX1-210ENST00000560260 MSI1O43347 362 aaKnown RBP22.76■■□□□ 1.23
SNX1-210ENST00000560260 IRF1P10914 325 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 NCAM1P13591 858 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 FLT3P36888 993 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 SLC18A3Q16572 532 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 SLC44A3Q8N4M1 653 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 TTC16Q8NEE8 873 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 ADAM32Q8TC27 787 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 RNF139Q8WU17 664 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 ASIC4Q96FT7 647 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 CDK5RAP1Q96SZ6 601 aaKnown RBP22.76■■□□□ 1.23
SNX1-210ENST00000560260 OLA1Q9NTK5 396 aaKnown RBP22.76■■□□□ 1.23
SNX1-210ENST00000560260 MARCH2Q9P0N8 246 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 CFAP97Q9P2B7 532 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 STRIP2Q9ULQ0 834 aa22.76■■□□□ 1.23
SNX1-210ENST00000560260 COL4A2P08572 1712 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 DPYSL4O14531 572 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 NARSO43776 548 aaKnown RBP22.75■■□□□ 1.23
SNX1-210ENST00000560260 GREM1O60565 184 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 IGLV3-25P01717 112 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 GSE1Q14687 1217 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 MTF1Q14872 753 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 PPP1R15BQ5SWA1 713 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 ALKBH5Q6P6C2 394 aaKnown RBP22.75■■□□□ 1.23
SNX1-210ENST00000560260 TADA2BQ86TJ2 420 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 TMEM139Q8IV31 216 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 MFSD6LQ8IWD5 586 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 EMC1Q8N766 993 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 C3orf20Q8ND61 904 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 BPIFB1Q8TDL5 484 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 NXPE3Q969Y0 559 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 DEF6Q9H4E7 631 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 WDR35Q9P2L0 1181 aa22.75■■□□□ 1.23
SNX1-210ENST00000560260 COL4A3Q01955 1670 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 MUC3AQ02505 3323 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 SLC12A8A0AV02 714 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 ZNF263O14978 683 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 HMBSP08397 361 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 TFE3P19532 575 aaPredicted RBP22.74■■□□□ 1.23
SNX1-210ENST00000560260 RNASE9P60153 205 aaKnown RBP22.74■■□□□ 1.23
SNX1-210ENST00000560260 FCHO2Q0JRZ9 810 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 DCAF6Q58WW2 860 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 CCDC122Q5T0U0 273 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 PPP1R2P3Q6NXS1 205 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 DEPDC1BQ8WUY9 529 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 E2F7Q96AV8 911 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 ZNF653Q96CK0 615 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 VCPIP1Q96JH7 1222 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 ZFYVE19Q96K21 471 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 PACSIN1Q9BY11 444 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 CALCOCO1Q9P1Z2 691 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 MUTYHQ9UIF7 546 aa22.74■■□□□ 1.23
SNX1-210ENST00000560260 CAPN9O14815 690 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 AKR1B10O60218 316 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms