RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FUT10Q6P4F1 479 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.21□□□□□ -0.3
USP3-213ENST00000559711 FAM131BQ86XD5 332 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 LRRC43Q8N309 656 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 CCDC185Q8N715 623 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 PLD5Q8N7P1 536 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 BBOF1Q8ND07 529 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 PCDH19Q8TAB3 1148 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 ZIM3Q96PE6 472 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 SH3GL2Q99962 352 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 C11orf49Q9H6J7 331 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 HCSTQ9UBK5 93 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 EFEMP2O95967 443 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 PECAM1P16284 738 aaPredicted RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 CAPN2P17655 700 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 TGM2P21980 687 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 OAS2P29728 719 aaKnown RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 GRIK1P39086 918 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 MAGEA11P43364 429 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 AIF1P55008 147 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 BCAR1P56945 870 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 DEUP1Q05D60 604 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 LRRC26Q2I0M4 334 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 CTXN3Q4LDR2 81 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 HSP90B2PQ58FF3 399 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 ZNF280DQ6N043 979 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 VSTM1Q6UX27 236 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 TET1Q8NFU7 2136 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 NTAN1Q96AB6 310 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 PAWRQ96IZ0 340 aaKnown RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 C8orf48Q96LL4 319 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 KCTD15Q96SI1 283 aaPredicted RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 TMEM121Q9BTD3 319 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 TRIM62Q9BVG3 475 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 DHX35Q9H5Z1 703 aaKnown RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 PRDM16Q9HAZ2 1276 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 PCDH9Q9HC56 1237 aa13.2□□□□□ -0.3
USP3-213ENST00000559711 WDR6Q9NNW5 1121 aaKnown RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 RCOR3Q9P2K3 495 aaPredicted RBP13.2□□□□□ -0.3
USP3-213ENST00000559711 H0YGN5 161 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 APOL1O14791 398 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 MCF2LO15068 1137 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 DGKIO75912 1065 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 F9P00740 461 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 NCAM1P13591 858 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 ZFXP17010 805 aaPredicted RBP13.19□□□□□ -0.3
USP3-213ENST00000559711 ITGA8P53708 1063 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 SLC5A3P53794 718 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 EIF3EP60228 445 aaKnown RBP13.19□□□□□ -0.3
USP3-213ENST00000559711 SLMAPQ14BN4 828 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 PPP6R3Q5H9R7 873 aaPredicted RBP13.19□□□□□ -0.3
USP3-213ENST00000559711 BSPRYQ5W0U4 402 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 LRIG3Q6UXM1 1119 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 GLIS1Q8NBF1 620 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 SCAMP5Q8TAC9 235 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 SLC7A14Q8TBB6 771 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 P3H4Q92791 437 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 CSPG4P5Q96PW8 444 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 OXCT2Q9BYC2 517 aaPredicted RBP13.19□□□□□ -0.3
USP3-213ENST00000559711 MAGEB5Q9BZ81 275 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 TSPYL1Q9H0U9 437 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 PIGVQ9NUD9 493 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 ANAPC5Q9UJX4 755 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 PCDHB5Q9Y5E4 795 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 NFS1Q9Y697 457 aa13.19□□□□□ -0.3
USP3-213ENST00000559711 ABHD14A-ACY1A0A1B0GW23 586 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 OPA1O60313 960 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 TIMP1P01033 207 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 RBP3P10745 1247 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 RARGP13631 454 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 STIP1P31948 543 aaKnown RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 ADRA1BP35368 520 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 C1QTNF8P60827 252 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 SCAPQ12770 1279 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 SMARCB1Q12824 385 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 NPNTQ6UXI9 565 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 PRUNE1Q86TP1 453 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 TMEM173Q86WV6 379 aaPredicted RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 CEP57Q86XR8 500 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 TOP1MTQ969P6 601 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 ADAM7Q9H2U9 754 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 CWH43Q9H720 699 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 AAASQ9NRG9 546 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 ABI2Q9NYB9 513 aaPredicted RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 CWC15Q9P013 229 aaKnown RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 FBXW11Q9UKB1 542 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 ATP8A1Q9Y2Q0 1164 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 NT5C1B-RDH14C9J2C7 533 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 H7C4K7 107 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 SGK1O00141 431 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 DNALI1O14645 258 aaPredicted RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 NDC80O14777 642 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 TRIM66O15016 1216 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 UPP2O95045 317 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 ZSCAN5DPP0CG00 497 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 ETS1P14921 441 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 NR2C2P49116 596 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 CXCR3P49682 368 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 VPS41P49754 854 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms