RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ARHGAP29Q52LW3 1261 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 SNX30Q5VWJ9 437 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 SYPL2Q5VXT5 272 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 CES5AQ6NT32 575 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 TRNP1Q6NT89 227 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 RSRC2Q7L4I2 434 aaKnown RBP10.05□□□□□ -0.8
CUX1-216ENST00000558469 GPR149Q86SP6 731 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 REXO1L1PQ8IX06 675 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 CCAR2Q8N163 923 aaKnown RBP10.05□□□□□ -0.8
CUX1-216ENST00000558469 LEMD2Q8NC56 503 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 RNF139Q8WU17 664 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 RXFP2Q8WXD0 754 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 TCEAL4Q96EI5 215 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 BTBD6Q96KE9 485 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 CFAP57Q96MR6 1250 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 SLC2A13Q96QE2 648 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 GCNAQ96QF7 691 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 DDX23Q9BUQ8 820 aaKnown RBP10.05□□□□□ -0.8
CUX1-216ENST00000558469 TRIM62Q9BVG3 475 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 S1PR5Q9H228 398 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 ADAM7Q9H2U9 754 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 CCSER2Q9H7U1 834 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 TRPC7Q9HCX4 862 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.05□□□□□ -0.8
CUX1-216ENST00000558469 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.05□□□□□ -0.84e-6■■■■□ 22.2
CUX1-216ENST00000558469 CLIC5Q9NZA1 410 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 CDH22Q9UJ99 828 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 SALL4Q9UJQ4 1053 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 ANAPC7Q9UJX3 599 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 NUDT5Q9UKK9 219 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 PAXBP1Q9Y5B6 917 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 EYSQ5T1H1 3165 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 C5orf42Q9H799 3197 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 DOCK8Q8NF50 2099 aa10.05□□□□□ -0.8
CUX1-216ENST00000558469 C2orf78A6NCI8 922 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 C2CD4BA6NLJ0 364 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 USP27XA6NNY8 438 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 MYO1FO00160 1098 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 NRG2O14511 850 aaPredicted RBP10.04□□□□□ -0.8
CUX1-216ENST00000558469 ZNF197O14709 1029 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 CCP110O43303 1012 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 TLR5O60602 858 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 MOCS3O95396 460 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 TBX18O95935 607 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 SDC4P31431 198 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 NOS2P35228 1153 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 ARHGAP25P42331 645 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 OGDHQ02218 1023 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 MESDQ14696 234 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 TCEAL1Q15170 157 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 TEAD2Q15562 447 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 C15orf59Q2T9L4 293 aaPredicted RBP10.04□□□□□ -0.8
CUX1-216ENST00000558469 CCDC14Q49A88 953 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 ARHGAP15Q53QZ3 475 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 PRSS36Q5K4E3 855 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 ATAT1Q5SQI0 421 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 C10orf120Q5SQS8 335 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 HECTD3Q5T447 861 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 TXNDC8Q6A555 127 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 ZNF662Q6ZS27 426 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 BEND5Q7L4P6 421 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 ARCQ7LC44 396 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 MAB21L3Q8N8X9 362 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 SHKBP1Q8TBC3 707 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 ADAM32Q8TC27 787 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 KIAA1524Q8TCG1 905 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 ING5Q8WYH8 240 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 MRPS31Q92665 395 aaKnown RBP10.04□□□□□ -0.8
CUX1-216ENST00000558469 MSLNLQ96KJ4 702 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 CYP2S1Q96SQ9 504 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 OLA1Q9NTK5 396 aaKnown RBP10.04□□□□□ -0.8
CUX1-216ENST00000558469 ZKSCAN5Q9Y2L8 839 aa10.04□□□□□ -0.8
CUX1-216ENST00000558469 MRPS23Q9Y3D9 190 aaKnown RBP10.04□□□□□ -0.8
CUX1-216ENST00000558469 SYNJ2BP-COX16A0A087WUM0 186 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 TMEM110-MUSTN1A8MSY1 372 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 H3BQ06 376 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 SNPHO15079 494 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 MDM4O15151 490 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 COCHO43405 550 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 MOSPD3O75425 235 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 MTA2O94776 668 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 TRUB2O95900 331 aaKnown RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 OAS1P00973 400 aaKnown RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 DESP17661 470 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 CEBPBP17676 345 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 TFE3P19532 575 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 FSHRP23945 695 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 PSMA2P25787 234 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 ATP5C1P36542 298 aaKnown RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 PTPN9P43378 593 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 SULT1E1P49888 294 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 TUBP50607 506 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 ZNF143P52747 638 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 HADHBP55084 474 aaKnown RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 PITX1P78337 314 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 ATP11AP98196 1134 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 ZNF252P-AS1Q0IIN9 211 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 EFEMP1Q12805 493 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 CDO1Q16878 200 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms