RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 DTNAQ9Y4J8 743 aa11.29□□□□□ -0.6
USP3-206ENST00000558157 ARID2Q68CP9 1835 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 WDR91A4D1P6 747 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 FARP2O94887 1054 aaPredicted RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 GCNT3O95395 438 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 PMLP29590 882 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CPOXP36551 454 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CPA2P48052 419 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 VCPP55072 806 aaKnown RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 PDIA2Q13087 525 aaKnown RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 MYBPC2Q14324 1141 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 TLR1Q15399 786 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CBWD6Q4V339 395 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CBWD3Q5JTY5 395 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CBWD5Q5RIA9 395 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 LPCAT4Q643R3 524 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 SCAIQ8N9R8 606 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 RAB3IL1Q8TBN0 382 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 PYDC1Q8WXC3 89 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 SNX27Q96L92 541 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 NACC1Q96RE7 527 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 GRIP2Q9C0E4 1043 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 NRDE2Q9H7Z3 1164 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 PPARGC1AQ9UBK2 798 aaKnown RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 ZNF180Q9UJW8 692 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 PCDHA10Q9Y5I2 948 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CEPT1Q9Y6K0 416 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 I3L4J1 428 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 DNAJA2O60884 412 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 TBCAO75347 108 aaKnown RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 PSAPP07602 524 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 ACAT1P24752 427 aaKnown RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 PCSK6P29122 969 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CTGFP29279 349 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 PSMC5P62195 406 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 MAP2K5Q13163 448 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 NCOA4Q13772 614 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 MAP7D1Q3KQU3 841 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 ATG16L1Q676U5 607 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 PGM2L1Q6PCE3 622 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 ABHD15Q6UXT9 468 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 DNAJC14Q6Y2X3 702 aaPredicted RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 RNF111Q6ZNA4 994 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 STXBP4Q6ZWJ1 553 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 PRPF39Q86UA1 669 aaKnown RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 ALYREFQ86V81 257 aaKnown RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 CCDC60Q8IWA6 550 aaPredicted RBP11.28□□□□□ -0.6
USP3-206ENST00000558157 GSTCDQ8NEC7 633 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 LMO3Q8TAP4 145 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 SLC26A7Q8TE54 656 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 PYROXD1Q8WU10 500 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 KCNN1Q92952 543 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 SGF29Q96ES7 293 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 APOPT1Q96IL0 206 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CLPTM1LQ96KA5 538 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CGREF1Q99674 301 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 OSBPL6Q9BZF3 934 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 DMAC2Q9NW81 257 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 CNTN3Q9P232 1028 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 GABBR1Q9UBS5 961 aa11.28□□□□□ -0.6
USP3-206ENST00000558157 TMEM150BA6NC51 233 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 CLIC2O15247 247 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 LPXNO60711 386 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 DKC1O60832 514 aaKnown RBP eCLIP11.27□□□□□ -0.6
USP3-206ENST00000558157 FAM155BO75949 473 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 SNAI1O95863 264 aaPredicted RBP11.27□□□□□ -0.6
USP3-206ENST00000558157 ALDH1A1P00352 501 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 SUPT20HL2P0C7V6 817 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 TGFB3P10600 412 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 FUT4P22083 530 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 PPARGP37231 505 aaPredicted RBP11.27□□□□□ -0.6
USP3-206ENST00000558157 HTRA3P83110 453 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 PFKPQ01813 784 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 KDSRQ06136 332 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 CCNIQ14094 377 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 CCDC153Q494R4 210 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 POTEHQ6S545 545 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 OLFML1Q6UWY5 402 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 MAMDC4Q6UXC1 1216 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 FBXO27Q8NI29 283 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 EPS8L1Q8TE68 723 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 COPS5Q92905 334 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 KATNBL1Q9H079 304 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 STN1Q9H668 368 aaKnown RBP11.27□□□□□ -0.6
USP3-206ENST00000558157 ACSS3Q9H6R3 686 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 VTA1Q9NP79 307 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 TBC1D23Q9NUY8 699 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 UBAP1Q9NZ09 502 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 RABGEF1Q9UJ41 708 aa11.27□□□□□ -0.6
USP3-206ENST00000558157 NOCTQ9UK39 431 aaKnown RBP11.27□□□□□ -0.6
USP3-206ENST00000558157 FAM32AQ9Y421 112 aaKnown RBP11.27□□□□□ -0.6
USP3-206ENST00000558157 IQANK1A0A1B0GTG1 560 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 FBP2O00757 339 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 TNPO2O14787 897 aaKnown RBP11.27□□□□□ -0.61
USP3-206ENST00000558157 PSTPIP1O43586 416 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 LYPLA2O95372 231 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 FAM58BPP0C7Q3 252 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 PHKA2P46019 1235 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 HDAC4P56524 1084 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms