RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 UEVLDQ8IX04 471 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 FBXL14Q8N1E6 418 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 B4GALNT2Q8NHY0 566 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 ZCRB1Q8TBF4 217 aaKnown RBP3.24□□□□□ -1.89
VPS13C-205ENST00000558088 ZNF479Q96JC4 524 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 FCRL5Q96RD9 977 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 NTPCRQ9BSD7 190 aaKnown RBP3.24□□□□□ -1.89
VPS13C-205ENST00000558088 STK31Q9BXU1 1019 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 DHX36Q9H2U1 1008 aaKnown RBP3.24□□□□□ -1.89
VPS13C-205ENST00000558088 SLC12A5Q9H2X9 1139 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 FAM83DQ9H4H8 585 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 ZMAT3Q9HA38 289 aaKnown RBP3.24□□□□□ -1.89
VPS13C-205ENST00000558088 SMURF2Q9HAU4 748 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 ANAPC4Q9UJX5 808 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 RIMKLBQ9ULI2 386 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 COG5Q9UP83 839 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 SBNO2Q9Y2G9 1366 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 CYSRT1A8MQ03 144 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 PYCARD-AS1I3L0S3 204 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 ACOT8O14734 319 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 INMTO95050 263 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 SLC3A2P08195 630 aaKnown RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 TPH1P17752 444 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 TNFRSF1BP20333 461 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 RPS6KB1P23443 525 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 WDR5P61964 334 aaKnown RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 SLC29A2Q14542 456 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 PTGR1Q14914 329 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 ANO6Q4KMQ2 910 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 MZT2AQ6P582 158 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 ZDHHC24Q6UX98 284 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 C11orf44Q8N8P7 122 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 OR56A3Q8NH54 315 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 ASB5Q8WWX0 329 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 CAMK1GQ96NX5 476 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 NT5C1BQ96P26 610 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 HIST1H2AAQ96QV6 131 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 SF3B5Q9BWJ5 86 aaKnown RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 TM2D2Q9BX73 214 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 ARHGAP39Q9C0H5 1083 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 RBM38Q9H0Z9 239 aaKnown RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 PAPOLBQ9NRJ5 636 aaKnown RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 MDFICQ9P1T7 246 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 GABBR1Q9UBS5 961 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 ASAP1Q9ULH1 1129 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 PNMA8BQ9ULN7 279 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 COL4A3BPQ9Y5P4 624 aa3.23□□□□□ -1.89
VPS13C-205ENST00000558088 SIRT4Q9Y6E7 314 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-205ENST00000558088 SPATA31A1Q5TZJ5 1347 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 ZNF335Q9H4Z2 1342 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 TMEM272A0A1B0GTI8 110 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 ERVV-2B6SEH9 535 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 RAB27BO00194 218 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 PRPF4O43172 522 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 TLX3O43711 291 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 TMEM225BP0DP42 221 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 TFEBP19484 476 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 ACVR2AP27037 513 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 RBL1P28749 1068 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 CPT1AP50416 773 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 DEUP1Q05D60 604 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 MTA1Q13330 715 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 CLCA4Q14CN2 919 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 INPP5JQ15735 1006 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 CNGA3Q16281 694 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 BRDTQ58F21 947 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 CLEC9AQ6UXN8 241 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 FOXP4Q8IVH2 680 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 YAF2Q8IY57 180 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 ADGRF4Q8IZF3 695 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 FSTL5Q8N475 847 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 METTL25Q8N6Q8 603 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 IL31RAQ8NI17 732 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 IPCEF1Q8WWN9 437 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 HOOK2Q96ED9 719 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 FAM84BQ96KN1 310 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 LRGUKQ96M69 825 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 FZD3Q9NPG1 666 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 SACM1LQ9NTJ5 587 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 MSRB1Q9NZV6 116 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 DNAJB11Q9UBS4 358 aa3.22□□□□□ -1.89
VPS13C-205ENST00000558088 IPO11Q9UI26 975 aaKnown RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 HEMK1Q9Y5R4 338 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-205ENST00000558088 NOTCH4Q99466 2003 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 SLC22A23A1A5C7 686 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 TRIM43BA6NCK2 446 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 CAPN8A6NHC0 703 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 TTC34A8MYJ7 566 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 RRHO14718 337 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 TBX3O15119 743 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 SPTLC2O15270 562 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 PRAMEF2O60811 474 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 EPN2O95208 641 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 TMIGD3P0DMS9 266 aaPredicted RBP3.21□□□□□ -1.9
VPS13C-205ENST00000558088 FGF3P11487 239 aaPredicted RBP3.21□□□□□ -1.9
VPS13C-205ENST00000558088 BRAFP15056 766 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 ZKSCAN1P17029 563 aaPredicted RBP3.21□□□□□ -1.9
VPS13C-205ENST00000558088 GALNSP34059 522 aa3.21□□□□□ -1.9
VPS13C-205ENST00000558088 POLD2P49005 469 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms