RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TREML1Q86YW5 311 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 ARID3BQ8IVW6 561 aaPredicted RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 MAB21L3Q8N8X9 362 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 SHKBP1Q8TBC3 707 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 NT5C1AQ9BXI3 368 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 FRMD8P1Q9BZ68 369 aaPredicted RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 FCHO1O14526 889 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 GSC2O15499 205 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 GAS2O43903 313 aaKnown RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 KRT36O76013 467 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 PDHA1P08559 390 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 CDK16Q00536 496 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 TFDP2Q14188 446 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 ACSBG2Q5FVE4 666 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 MICAL1Q8TDZ2 1067 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 ALKBH8Q96BT7 664 aaKnown RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 NAF1Q96HR8 494 aaKnown RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 DHX35Q9H5Z1 703 aaKnown RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 PRMT7Q9NVM4 692 aaPredicted RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 CHADO15335 359 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 GYG2O15488 501 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 OSBPP22059 807 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 TMPRSS15P98073 1019 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 CHI3L2Q15782 390 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 C16orf46Q6P387 395 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 CLPTM1LQ96KA5 538 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 BTBD10Q9BSF8 475 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 IQCGQ9H095 443 aaKnown RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 ERAP1Q9NZ08 941 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 TUBGCP4Q9UGJ1 667 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 WFS1O76024 890 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 LGALS2P05162 132 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 CYP2C8P10632 490 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 CYP2F1P24903 491 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 SDC4P31431 198 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 RASSF2P50749 326 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 OLIG2Q13516 323 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 KIZQ2M2Z5 673 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 ZNF618Q5T7W0 954 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 TTC39BQ5VTQ0 682 aaPredicted RBP13.36□□□□□ -0.27
LDLR-207ENST00000558013 BSPRYQ5W0U4 402 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 AFG1LQ8WV93 481 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 NRG4Q8WWG1 115 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 OXNAD1Q96HP4 312 aaPredicted RBP13.36□□□□□ -0.27
LDLR-207ENST00000558013 NSL1Q96IY1 281 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 PHACTR1Q9C0D0 580 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 ARHGEF4Q9NR80 690 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 PAK5Q9P286 719 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 PLLPQ9Y342 182 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 DNAJC25-GNG10A0A024R161 153 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 MCF2P10911 925 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 CCDC130P13994 396 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 INCA1Q0VD86 236 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 CRYMQ14894 314 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 SOWAHAQ2M3V2 549 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 CCDC185Q8N715 623 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 SIGLEC10Q96LC7 697 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 LGMNQ99538 433 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 NRDE2Q9H7Z3 1164 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 TLE6Q9H808 572 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 SAR1AQ9NR31 198 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 LNPEPQ9UIQ6 1025 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 WDR90Q96KV7 1748 aa13.36□□□□□ -0.27
LDLR-207ENST00000558013 NDC80O14777 642 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 TSPAN1O60635 241 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 CCDC22O60826 627 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 ENO1P06733 434 aaKnown RBP13.35□□□□□ -0.27
LDLR-207ENST00000558013 SNRPAP09012 282 aaKnown RBP13.35□□□□□ -0.27
LDLR-207ENST00000558013 LCP1P13796 627 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 ADORA2BP29275 332 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 ARHGAP1Q07960 439 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 RCN2Q14257 317 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 ACAP1Q15027 740 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 NBPF20Q3BBV1 942 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 FAM47CQ5HY64 1035 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 KCNT2Q6UVM3 1135 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 DENND5BQ6ZUT9 1274 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 CHSY1Q86X52 802 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 TP53INP2Q8IXH6 220 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 NDUFAF2Q8N183 169 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 EBF4Q9BQW3 602 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 ASB7Q9H672 318 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 CYP3A43Q9HB55 503 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 SNTG2Q9NY99 539 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.35□□□□□ -0.27
LDLR-207ENST00000558013 SYNJ2BP-COX16A0A087WUM0 186 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.35□□□□□ -0.27
LDLR-207ENST00000558013 A0A0G2JLL6 359 aaPredicted RBP13.35□□□□□ -0.27
LDLR-207ENST00000558013 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.35□□□□□ -0.27
LDLR-207ENST00000558013 AMPD1P23109 780 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 LMO2P25791 158 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 SLC8A3P57103 927 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 PITX1P78337 314 aaPredicted RBP13.35□□□□□ -0.27
LDLR-207ENST00000558013 RBP5P82980 135 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 KDSRQ06136 332 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 RCN1Q15293 331 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 SLC9A4Q6AI14 798 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 ATG14Q6ZNE5 492 aa13.35□□□□□ -0.27
LDLR-207ENST00000558013 PRRT2Q7Z6L0 340 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms