RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PCDHB7Q9Y5E2 793 aa3.5□□□□□ -1.85
TRAV28-201ENST00000557548 COL15A1P39059 1388 aa3.5□□□□□ -1.85
TRAV28-201ENST00000557548 A0A1B0GTW7 788 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 SYNDIG1LA6NDD5 238 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 B4DLN1 442 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 F5H697 171 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 H3BNC9 293 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 KIAA0355O15063 1070 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 MFAP3LO75121 409 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 PTP4A3O75365 173 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 HEXIM1O94992 359 aaKnown RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ZFPL1O95159 310 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 VNN1O95497 513 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 SLC3A2P08195 630 aaKnown RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 PEPDP12955 493 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 TGM1P22735 817 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 GLDCP23378 1020 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 EPHA3P29320 983 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 THBS4P35443 961 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 PAFAH1B1P43034 410 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 GSTM5P46439 218 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 MTHFSP49914 203 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ANXA11P50995 505 aaKnown RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 FAM3BP58499 235 aaPredicted RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 RPP30P78346 268 aaKnown RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 OCA2Q04671 838 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 TBCEQ15813 527 aaPredicted RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 BAK1Q16611 211 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 NFIL3Q16649 462 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 LY6KQ17RY6 165 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 VMACQ2NL98 169 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 CD300EQ496F6 205 aaPredicted RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 METTL24Q5JXM2 366 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ZNF569Q5MCW4 686 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 FAM69AQ5T7M9 428 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 SNX30Q5VWJ9 437 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ANKRD40Q6AI12 368 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 SFRP4Q6FHJ7 346 aaPredicted RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 FOXR2Q6PJQ5 311 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 TMCO3Q6UWJ1 677 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 RINLQ6ZS11 566 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 LRRC8DQ7L1W4 858 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 KRT27Q7Z3Y8 459 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 CLNKQ7Z7G1 428 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 FAM124AQ86V42 546 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ADGRG5Q8IZF4 528 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ABRAQ8N0Z2 381 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 SYNE4Q8N205 404 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 LRRC71Q8N4P6 559 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 NGEFQ8N5V2 710 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 METTL25Q8N6Q8 603 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ANKRD44Q8N8A2 993 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 GPATCH11Q8N954 259 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 FSIP1Q8NA03 581 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 OSCP1Q8WVF1 389 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 TMEM125Q96AQ2 219 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 DACT3Q96B18 629 aaPredicted RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 REXO5Q96IC2 774 aaKnown RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 APOPT1Q96IL0 206 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 EIF3CQ99613 913 aaKnown RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 HERC2P3Q9BVR0 1158 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 PHF7Q9BWX1 381 aaPredicted RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ARHGAP39Q9C0H5 1083 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 USP44Q9H0E7 712 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 SLC25A18Q9H1K4 315 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 CCDC68Q9H2F9 335 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 NKIRAS2Q9NYR9 191 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 BAG5Q9UL15 447 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 RCE1Q9Y256 329 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 ZBTB1Q9Y2K1 713 aa3.49□□□□□ -1.85
TRAV28-201ENST00000557548 TDRD9Q8NDG6 1382 aaKnown RBP3.49□□□□□ -1.85
TRAV28-201ENST00000557548 LOC105369274A0A096LPK9 316 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 LOC102723532A0A0G2JNH3 316 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 A0A1W2PRQ8 180 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 GXYLT2A0PJZ3 443 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 AGAP5A6NIR3 686 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 SAC3D1A6NKF1 404 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 E7ENX8 843 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 RFXAPO00287 272 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 ZNF185O15231 689 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 SEPT4O43236 478 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 CTIFO43310 598 aaKnown RBP3.48□□□□□ -1.85
TRAV28-201ENST00000557548 ANP32CO43423 234 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 PLOD3O60568 738 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 URI1O94763 535 aaPredicted RBP3.48□□□□□ -1.85
TRAV28-201ENST00000557548 WDR47O94967 919 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 GPANK1O95872 356 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 SCGB1D1O95968 90 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 F9P00740 461 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 ERBB2P04626 1255 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 AKR1B1P15121 316 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 ALOX12P18054 663 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 PTMSP20962 102 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 MAPK4P31152 587 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 APOBEC3AP31941 199 aaPredicted RBP3.48□□□□□ -1.85
TRAV28-201ENST00000557548 HOXD13P35453 343 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 MSX2P35548 267 aaPredicted RBP3.48□□□□□ -1.85
TRAV28-201ENST00000557548 ACTN2P35609 894 aa3.48□□□□□ -1.85
TRAV28-201ENST00000557548 RPS19P39019 145 aaKnown RBP3.48□□□□□ -1.85
TRAV28-201ENST00000557548 HARS2P49590 506 aaKnown RBP3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms