RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 SPECC1L-ADORA2AF8WAN1 911 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 APOC4-APOC2K7ER74 178 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 B3GAT3O94766 335 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 APOC2P02655 101 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 TCN1P20061 433 aaPredicted RBP15.37■□□□□ 0.05
CUX1-215ENST00000556210 GARSP41250 739 aaKnown RBP15.37■□□□□ 0.05
CUX1-215ENST00000556210 MTFR1Q15390 333 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 MAP7D1Q3KQU3 841 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 PRPF39Q86UA1 669 aaKnown RBP15.37■□□□□ 0.05
CUX1-215ENST00000556210 TEX9Q8N6V9 391 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 SYT11Q9BT88 431 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 RNPEPL1Q9HAU8 725 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 TCRBV9S1A1TA0A576 114 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 EEF2KO00418 725 aaKnown RBP15.37■□□□□ 0.05
CUX1-215ENST00000556210 TMEM63AO94886 807 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 GSTA2P09210 222 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 CALB2P22676 271 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 EPHX2P34913 555 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 RTP1P59025 263 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 THOC5Q13769 683 aaKnown RBP15.37■□□□□ 0.05
CUX1-215ENST00000556210 GRAMD1BQ3KR37 738 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 MTMR14Q8NCE2 650 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 SLC17A6Q9P2U8 582 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 TRUB2O95900 331 aaKnown RBP15.37■□□□□ 0.05
CUX1-215ENST00000556210 MT-CO1P00395 513 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 FBXO47Q5MNV8 452 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 NOTUMQ6P988 496 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 TNIP3Q96KP6 325 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 DPEP3Q9H4B8 488 aa15.37■□□□□ 0.05
CUX1-215ENST00000556210 MEI4A8MW99 385 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 CCDC22O60826 627 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 PMPCBO75439 489 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 ZWINTO95229 277 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 GOT1P17174 413 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 CA9Q16790 459 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 OTOAQ7RTW8 1153 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 SLC4A11Q8NBS3 891 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 IPMKQ8NFU5 416 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 OR6P1Q8NGX9 317 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 ZNF395Q9H8N7 513 aaPredicted RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 SPC25Q9HBM1 224 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.36■□□□□ 0.053e-6■■■■□ 19.4
CUX1-215ENST00000556210 SLC39A10Q9ULF5 831 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 XIRP1Q702N8 1843 aaKnown RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 MGAT1P26572 445 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 GRIA1P42261 906 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 SERPINB4P48594 390 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 HADHBP55084 474 aaKnown RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 NBPF20Q3BBV1 942 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 SLC10A6Q3KNW5 377 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 RGS9BPQ6ZS82 235 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 XYLT1Q86Y38 959 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 COLGALT1Q8NBJ5 622 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.36■□□□□ 0.05
CUX1-215ENST00000556210 STK32AQ8WU08 396 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 FGD4Q96M96 766 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 ZFP42Q96MM3 310 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 TBC1D10AQ9BXI6 508 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 UGT1A9O60656 530 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 HOXC6P09630 235 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 ERVK-10P10266 1014 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 ZNF280AP59817 542 aaPredicted RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 CTU1Q7Z7A3 348 aaKnown RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 SLC26A11Q86WA9 606 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 UNC5BQ8IZJ1 945 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 RFWD2Q8NHY2 731 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 TFB1MQ8WVM0 346 aaKnown RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 TUBB6Q9BUF5 446 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 EIF2AQ9BY44 585 aaKnown RBP15.36■□□□□ 0.05
CUX1-215ENST00000556210 FOXP3Q9BZS1 431 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 UGT1A7Q9HAW7 530 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 UGT1A10Q9HAW8 530 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 UGT1A8Q9HAW9 530 aa15.36■□□□□ 0.05
CUX1-215ENST00000556210 AP1G2O75843 785 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 STAMBPO95630 424 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 POMCP01189 267 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 UBTFL6P0CB48 400 aaPredicted RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 SIX1Q15475 284 aaPredicted RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 CYP1B1Q16678 543 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 CCDC142Q17RM4 750 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 TTC39BQ5VTQ0 682 aaPredicted RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 BBS12Q6ZW61 710 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 RNF139Q8WU17 664 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 EPB41L4BQ9H329 900 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 PAPOLBQ9NRJ5 636 aaKnown RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 TMPRSS4Q9NRS4 437 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 MTA2O94776 668 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 JCHAINP01591 159 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 TAF1CQ15572 869 aaPredicted RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 ARL13BQ3SXY8 428 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 RIBC1Q8N443 379 aaPredicted RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 C20orf96Q9NUD7 363 aaPredicted RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 TNFSF13BQ9Y275 285 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 CRCPO75575 148 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 TOP3BO95985 862 aaKnown RBP15.35■□□□□ 0.05
CUX1-215ENST00000556210 RNF157Q96PX1 679 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 FSD1LQ9BXM9 530 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 SDCBP2Q9H190 292 aa15.35■□□□□ 0.05
CUX1-215ENST00000556210 GTSE1Q9NYZ3 720 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms