RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PPIL6Q8IXY8 311 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 PWWP2AQ96N64 755 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 RBM15Q96T37 977 aaKnown RBP eCLIP27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 NRDE2Q9H7Z3 1164 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 LRRC4CQ9HCJ2 640 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 MTMR10Q9NXD2 777 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 KANSL3Q9P2N6 904 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 FZD10Q9ULW2 581 aa27.4■■□□□ 1.98
CCDC88C-205ENST00000553403 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 DSC1Q08554 894 aa27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 NOMO2Q5JPE7 1267 aa27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 OTUD1Q5VV17 481 aaPredicted RBP27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 OVOS1Q6IE37 1185 aa27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 CCDC185Q8N715 623 aa27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 PRCCQ92733 491 aaPredicted RBP27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 KCTD15Q96SI1 283 aaPredicted RBP27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 C10orf88Q9H8K7 445 aa27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 DNAJC17Q9NVM6 304 aaKnown RBP27.39■■□□□ 1.97
CCDC88C-205ENST00000553403 H7C0C1 242 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 TMEM189-UBE2V1I3L0A0 370 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 RASGRF2O14827 1237 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 ACSL3O95573 720 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 ACTN2P35609 894 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 MAGEA4P43358 317 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 ATP5OP48047 213 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 BFSP2Q13515 415 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 KYNUQ16719 465 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 PPP6R3Q5H9R7 873 aaPredicted RBP27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 CLLU1OSQ5K130 101 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 MFSD5Q6N075 450 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 SCML4Q8N228 414 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 FAM71DQ8N9W8 422 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 UHMK1Q8TAS1 419 aaKnown RBP27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 KCNK16Q96T55 309 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 STMN4Q9H169 189 aaPredicted RBP27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 RRN3Q9NYV6 651 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 CALCOCO1Q9P1Z2 691 aa27.38■■□□□ 1.97
CCDC88C-205ENST00000553403 BCLAF3A2AJT9 711 aaKnown RBP27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 NRP1O14786 923 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 TCEA3O75764 348 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 AGTP01019 485 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 ABHD2P08910 425 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 CACNA2D1P54289 1103 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 LEKR1Q6ZMV7 388 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 HASPINQ8TF76 798 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 IRGQQ8WZA9 623 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 RTP4Q96DX8 246 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 TTC25Q96NG3 672 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 TMEM30AQ9NV96 361 aa27.37■■□□□ 1.97
CCDC88C-205ENST00000553403 RGS16O15492 202 aaPredicted RBP27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 NR2C2P49116 596 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 ATP1A2P50993 1020 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 IRAK1P51617 712 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 MAGOHP61326 146 aaKnown RBP27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 PPP2R2AP63151 447 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 TSPY1Q01534 308 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 HFE2Q6ZVN8 426 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 GPRIN1Q7Z2K8 1008 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 SLC9A7Q96T83 725 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 PNPLA8Q9NP80 782 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 TLDC2A0PJX2 215 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 M0QYT0 321 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 DNM1LO00429 736 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 ZBED1O96006 694 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 AIF1P55008 147 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 GNGT1P63211 74 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 XRCC4Q13426 336 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 CENPUQ71F23 418 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 ZC3H18Q86VM9 953 aaKnown RBP27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 FAM131BQ86XD5 332 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 NAT8LQ8N9F0 302 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 CPT1BQ92523 772 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 SERPINB12Q96P63 405 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 CSPG4P5Q96PW8 444 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 ELAC1Q9H777 363 aaKnown RBP27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 USP29Q9HBJ7 922 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 SAYSD1Q9NPB0 183 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 DMAP1Q9NPF5 467 aaPredicted RBP27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 TMEM161AQ9NX61 479 aa27.36■■□□□ 1.97
CCDC88C-205ENST00000553403 DDHD2O94830 711 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 ITGB1P05556 798 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 FYNP06241 537 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 HPDP32754 393 aaPredicted RBP27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 ARL4AP40617 200 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 DEUP1Q05D60 604 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 TNFAIP8L3Q5GJ75 292 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 SYPL2Q5VXT5 272 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 FAM126BQ8IXS8 530 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 COLGALT2Q8IYK4 626 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 OR10T2Q8NGX3 314 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 EPS8L3Q8TE67 593 aaKnown RBP27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 PGAP3Q96FM1 320 aaPredicted RBP27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 USP3Q9Y6I4 520 aa27.35■■□□□ 1.97
CCDC88C-205ENST00000553403 YJEFN3A6XGL0 299 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 E7ENQ6 273 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 CAPN9O14815 690 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 ALOX15BO15296 676 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 EIF3HO15372 352 aaKnown RBP eCLIP27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 LTFP02788 710 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 PM20D1Q6GTS8 502 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms