RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CDK7P50613 346 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 ORC1Q13415 861 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 ZCCHC23Q6ZST2 131 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 PLD5Q8N7P1 536 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 GSTCDQ8NEC7 633 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.18■□□□□ 0.5
SYNE3-202ENST00000553340 GSDMBQ8TAX9 411 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 CENPKQ9BS16 269 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 DMAP1Q9NPF5 467 aaPredicted RBP18.18■□□□□ 0.5
SYNE3-202ENST00000553340 HEY1Q9Y5J3 304 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 MAD1L1Q9Y6D9 718 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 MEI4A8MW99 385 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 MAGEA6P43360 314 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 CDH8P55286 799 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 CNTN2Q02246 1040 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 PTPN11Q06124 597 aaPredicted RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 CUL3Q13618 768 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 HNRNPDQ14103 355 aaKnown RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 TARBP2Q15633 366 aaKnown RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 SH3PXD2AQ5TCZ1 1133 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 CYP4V2Q6ZWL3 525 aaPredicted RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 AGBL3Q8NEM8 1001 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 FAM172AQ8WUF8 416 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 ZNF214Q9UL59 606 aaPredicted RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 FAM159BA6NKW6 160 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 MICAL2O94851 1124 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 RPS6KA3P51812 740 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 BCAR1P56945 870 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 DBN1Q16643 649 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 RAPH1Q70E73 1250 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 ILDR2Q71H61 639 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 DHDDSQ86SQ9 333 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 RASSF3Q86WH2 238 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 ST13P4Q8IZP2 240 aaPredicted RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 MCUQ8NE86 351 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 OR6Y1Q8NGX8 325 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 PIWIL2Q8TC59 973 aaKnown RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 AZIN2Q96A70 460 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 ZBED3Q96IU2 234 aaPredicted RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 GORASP1Q9BQQ3 440 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 APOL6Q9BWW8 343 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 BCO2Q9BYV7 579 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 VCX3BQ9H321 246 aa18.17■□□□□ 0.5
SYNE3-202ENST00000553340 STN1Q9H668 368 aaKnown RBP18.17■□□□□ 0.5
SYNE3-202ENST00000553340 FER1L6Q2WGJ9 1857 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 HMX2A2RU54 273 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 M0QYV0 167 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 APOL1O14791 398 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 KLHL2O95198 593 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 PRKCBP05771 671 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 TGM2P21980 687 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 SLC25A3Q00325 362 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 PDK2Q15119 407 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 STXBP2Q15833 593 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 LIN52Q52LA3 116 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 CFAP157Q5JU67 520 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 TRMT10BQ6PF06 316 aaKnown RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 ACAD11Q709F0 780 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 SPATA16Q9BXB7 569 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 EBF3Q9H4W6 596 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 ACAD9Q9H845 621 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 ZDHHC7Q9NXF8 308 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 APOBEC2Q9Y235 224 aaKnown RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 IGKV6D-21A0A0A0MT36 114 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 BCLAF3A2AJT9 711 aaKnown RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 B4GALT4O60513 344 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 MAFO75444 373 aaPredicted RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 SRGAP2CP0DJJ0 459 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 PDGFRAP16234 1089 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 PDE1BQ01064 536 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 ASPHQ12797 758 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 CNPY1Q3B7I2 92 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 FASTKD1Q53R41 847 aaKnown RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 PDSS2Q86YH6 399 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 ADGRF2Q8IZF7 708 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 DEPDC1BQ8WUY9 529 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 RXFP2Q8WXD0 754 aa18.16■□□□□ 0.5
SYNE3-202ENST00000553340 EBNA1BP2Q99848 306 aaKnown RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 ZNF277Q9NRM2 450 aaPredicted RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 GOLGB1Q14789 3259 aaKnown RBP18.16■□□□□ 0.5
SYNE3-202ENST00000553340 RNASEH1O60930 286 aaKnown RBP18.15■□□□□ 0.5
SYNE3-202ENST00000553340 ICAM3P32942 547 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 OSTNP61366 133 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 IRX4P78413 519 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 CDO1Q16878 200 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 C15orf59Q2T9L4 293 aaPredicted RBP18.15■□□□□ 0.5
SYNE3-202ENST00000553340 ZBTB8OSQ8IWT0 167 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 TEPSINQ96N21 525 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 OLFM3Q96PB7 478 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 SMYD3Q9H7B4 428 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 VCX3AQ9NNX9 186 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 COL11A1P12107 1806 aaPredicted RBP18.15■□□□□ 0.5
SYNE3-202ENST00000553340 PARP14Q460N5 1801 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 C2CD4BA6NLJ0 364 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 HMGCRP04035 888 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 CNTFP26441 200 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 GPD2P43304 727 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 COPAP53621 1224 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 BACE1P56817 501 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 MED21Q13503 144 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms