RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TRPM5Q9NZQ8 1165 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 GMIPQ9P107 970 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 CHORDC1Q9UHD1 332 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-211ENST00000552338 ANAPC7Q9UJX3 599 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 STAP1Q9ULZ2 295 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 CAPN6Q9Y6Q1 641 aa10.01□□□□□ -0.81
LIMA1-211ENST00000552338 CDH23Q9H251 3354 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 A0A1W2PQH9 124 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 ESPNB1AK53 854 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 GOLGA8SH3BPF8 625 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 PIK3R2O00459 728 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 ZNF197O14709 1029 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 LRCH4O75427 683 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 RFPL2O75678 378 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 IGLV3-27P01718 113 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 NCAM1P13591 858 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 PRLRP16471 622 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 MSNP26038 577 aaKnown RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 SDC4P31431 198 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 CA8P35219 290 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 GTF2F1P35269 517 aaKnown RBP eCLIP10□□□□□ -0.81
LIMA1-211ENST00000552338 LTBRP36941 435 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 NOP2P46087 812 aaKnown RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 CXCR3P49682 368 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 KPNA1P52294 538 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 ETF1P62495 437 aaKnown RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 HABP4Q5JVS0 413 aaKnown RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 ACBD5Q5T8D3 534 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 MEI1Q5TIA1 1274 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 BTBD8Q5XKL5 378 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 RBM23Q86U06 439 aaKnown RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 STKLD1Q8NE28 680 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 GADD45GIP1Q8TAE8 222 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 FAM71BQ8TC56 605 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 GPR152Q8TDT2 470 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 AZIN2Q96A70 460 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 NTAN1Q96AB6 310 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 FAM149B1Q96BN6 582 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 HES6Q96HZ4 224 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 MSLNLQ96KJ4 702 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 CFAP57Q96MR6 1250 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 GAS2L1Q99501 681 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 ADAM33Q9BZ11 813 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 IRX2Q9BZI1 471 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 ADAM7Q9H2U9 754 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 ASAH2Q9NR71 780 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 CLEC1BQ9P126 229 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 NAALADL1Q9UQQ1 740 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 JRKLQ9Y4A0 524 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 FARP1Q9Y4F1 1045 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 PAXBP1Q9Y5B6 917 aa10□□□□□ -0.81
LIMA1-211ENST00000552338 KIF26AQ9ULI4 1882 aaPredicted RBP10□□□□□ -0.81
LIMA1-211ENST00000552338 MACROD2A1Z1Q3 448 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 CCDC66A2RUB6 948 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 MIF4GDA9UHW6 222 aaKnown RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 ZNF487B1APH4 448 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 CES2O00748 559 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 MDM4O15151 490 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 IRAK2O43187 625 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 BUB1O43683 1085 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 KIF5CO60282 957 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 TLR5O60602 858 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 PALMO75781 387 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 RNF8O76064 485 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 MOCS3O95396 460 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 GJB6O95452 261 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 TRUB2O95900 331 aaKnown RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 RHOP08100 348 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 RARGP13631 454 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 DESP17661 470 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 CTNNA2P26232 953 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 ATP5C1P36542 298 aaKnown RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 PEX5P50542 639 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 CDR1P51861 262 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 HDAC4P56524 1084 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 SLC7A9P82251 487 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 SLC25A11Q02978 314 aaKnown RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 SCAPQ12770 1279 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 PPP2R5DQ14738 602 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 DCAF6Q58WW2 860 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 BRMS1LQ5PSV4 323 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 HECTD3Q5T447 861 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 PAPD7Q5XG87 772 aaKnown RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 CYP4V2Q6ZWL3 525 aaPredicted RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 EMC1Q8N766 993 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 DQX1Q8TE96 717 aaKnown RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 TEKT4Q8WW24 435 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 SERPINB11Q96P15 392 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 ALS2CR12Q96Q35 445 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 TBCBQ99426 244 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 ARHGEF38Q9NXL2 777 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 CALCOCO1Q9P1Z2 691 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 TLR6Q9Y2C9 796 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 HBS1LQ9Y450 684 aaKnown RBP9.99□□□□□ -0.81
LIMA1-211ENST00000552338 PCDHA3Q9Y5H8 950 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 CHD5Q8TDI0 1954 aa9.99□□□□□ -0.81
LIMA1-211ENST00000552338 BRWD1Q9NSI6 2320 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 KCNU1A8MYU2 1149 aa9.98□□□□□ -0.81
LIMA1-211ENST00000552338 CAPN9O14815 690 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms