RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FSTL5Q8N475 847 aaPredicted RBP4.77□□□□□ -1.65
VPS29-205ENST00000548539 SCAMP5Q8TAC9 235 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 ASB10Q8WXI3 467 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 ZNF668Q96K58 619 aaPredicted RBP4.77□□□□□ -1.65
VPS29-205ENST00000548539 HAPLN3Q96S86 360 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 C1QTNF7Q9BXJ2 289 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 GLOD4Q9HC38 313 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 FSCN3Q9NQT6 498 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 SEMA4GQ9NTN9 838 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 SRP68Q9UHB9 627 aaKnown RBP4.77□□□□□ -1.65
VPS29-205ENST00000548539 RIMKLBQ9ULI2 386 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 USP22Q9UPT9 525 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 DRG1Q9Y295 367 aaKnown RBP4.77□□□□□ -1.65
VPS29-205ENST00000548539 SLC27A6Q9Y2P4 619 aa4.77□□□□□ -1.65
VPS29-205ENST00000548539 PNMA6EA0A0J9YXQ4 647 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 EIF3FO00303 357 aaPredicted RBP4.76□□□□□ -1.65
VPS29-205ENST00000548539 WDHD1O75717 1129 aaPredicted RBP4.76□□□□□ -1.65
VPS29-205ENST00000548539 AGR2O95994 175 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 ANXA6P08133 673 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 CHRM2P08172 466 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 RBL1P28749 1068 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 EPHA3P29320 983 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 SLC5A2P31639 672 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 PRKAA2P54646 552 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 ARL4CP56559 192 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 KRTAP10-6P60371 365 aaPredicted RBP4.76□□□□□ -1.65
VPS29-205ENST00000548539 SRSF4Q08170 494 aaKnown RBP4.76□□□□□ -1.65
VPS29-205ENST00000548539 SCAPQ12770 1279 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 TBCCQ15814 346 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 GPR162Q16538 588 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 P3H1Q32P28 736 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 TANGO2Q6ICL3 276 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 ARMC6Q6NXE6 501 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 DPY19L3Q6ZPD9 716 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 RFX8Q6ZV50 586 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 RRAGAQ7L523 313 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 C1QL2Q7Z5L3 287 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 MOGAT3Q86VF5 341 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 ANKRD18AQ8IVF6 992 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 METTL25Q8N6Q8 603 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 MBD3L2Q8NHZ7 208 aaPredicted RBP4.76□□□□□ -1.65
VPS29-205ENST00000548539 OTUD7AQ8TE49 926 aaPredicted RBP4.76□□□□□ -1.65
VPS29-205ENST00000548539 ABHD5Q8WTS1 349 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 R3HDM4Q96D70 268 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 EID2BQ96D98 161 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 ZNF778Q96MU6 729 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 EIF2AK1Q9BQI3 630 aaKnown RBP4.76□□□□□ -1.65
VPS29-205ENST00000548539 RTKNQ9BST9 563 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 CASS4Q9NQ75 786 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 HELLSQ9NRZ9 838 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 TBCCD1Q9NVR7 557 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 DKK3Q9UBP4 350 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 CA14Q9ULX7 337 aa4.76□□□□□ -1.65
VPS29-205ENST00000548539 MAST3O60307 1309 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 A1L4Q6 167 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 OR2W5A6NFC9 320 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 B9A039 149 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 EXOC5O00471 708 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 PPP6R2O75170 966 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 TAF5LO75529 589 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 NTSR2O95665 410 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 PYGLP06737 847 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 FESP07332 822 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 HTR7P34969 479 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 LIPAP38571 399 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 TIRAPP58753 221 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 AP2B1P63010 937 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 TIAL1Q01085 375 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS29-205ENST00000548539 POU5F1BQ06416 359 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 ZNF169Q14929 603 aaPredicted RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 TAF12Q16514 161 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 TRIM71Q2Q1W2 868 aaKnown RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 TREML2Q5T2D2 321 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 CAND1Q86VP6 1230 aaKnown RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 SLC44A2Q8IWA5 706 aaPredicted RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 CSGALNACT1Q8TDX6 532 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 XAGE5Q8WWM1 108 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 FKBP10Q96AY3 582 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 ZDHHC12Q96GR4 267 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 UBXN10Q96LJ8 280 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 ZSCAN31Q96LW9 406 aaPredicted RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 NAP1L4Q99733 375 aaKnown RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 VN1R3Q9BXE9 311 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 PABPC3Q9H361 631 aaKnown RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 TP63Q9H3D4 680 aaPredicted RBP4.75□□□□□ -1.65
VPS29-205ENST00000548539 PRDM8Q9NQV8 689 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 VPS45Q9NRW7 570 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 KIF17Q9P2E2 1029 aa4.75□□□□□ -1.65
VPS29-205ENST00000548539 SALL3Q9BXA9 1300 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 RRN3P2A6NIE6 340 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 VWC2LB2RUY7 222 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 SRGNP10124 158 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 HOXB6P17509 224 aaKnown RBP4.74□□□□□ -1.65
VPS29-205ENST00000548539 DRD1P21728 446 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 CNTFP26441 200 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 PBX1P40424 430 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 SIM1P81133 766 aaPredicted RBP4.74□□□□□ -1.65
VPS29-205ENST00000548539 ITIH3Q06033 890 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 CUL4BQ13620 913 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 ATPAF1Q5TC12 328 aaPredicted RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms