RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 SKIDA1Q1XH10 827 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 PKDCCQ504Y2 493 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 HOOK3Q86VS8 718 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 TMEM173Q86WV6 379 aaPredicted RBP17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 ARFGAP2Q8N6H7 521 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 UBE2ZQ9H832 354 aaPredicted RBP17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 LRRC4CQ9HCJ2 640 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 AAASQ9NRG9 546 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 TBC1D13Q9NVG8 400 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 DNAJB4Q9UDY4 337 aa17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 NOVA2Q9UNW9 492 aaKnown RBP17.27■□□□□ 0.36
CHMP1A-204ENST00000547687 TULP2O00295 520 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 GABRDO14764 452 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 EIF3HO15372 352 aaKnown RBP eCLIP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 LINC01565O15544 149 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 RIPK2O43353 540 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ATP2C2O75185 946 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 CCDC130P13994 396 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 LAG3P18627 525 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ACAT1P24752 427 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 HPDP32754 393 aaPredicted RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 VPS41P49754 854 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ERVFC1P60507 584 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 HYAL1Q12794 435 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 BYSLQ13895 437 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ARHGAP17Q68EM7 881 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 DRICH1Q6PGQ1 229 aaPredicted RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 CD300LGQ6UXG3 332 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 FAM43BQ6ZT52 329 aaPredicted RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ZNF280BQ86YH2 543 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 BBOF1Q8ND07 529 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 MICAL1Q8TDZ2 1067 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 HASPINQ8TF76 798 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 MIS12Q9H081 205 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 TSPYL1Q9H0U9 437 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 CLDND1Q9NY35 253 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 CALCOCO1Q9P1Z2 691 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 HESX1Q9UBX0 185 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 DNPEPQ9ULA0 475 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 C3orf70A6NLC5 250 aaPredicted RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 I3L4J1 428 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 PER2O15055 1255 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 FAM163BP0C2L3 166 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 IL1R2P27930 398 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ADORA2BP29275 332 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 RNASELQ05823 741 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ACAP1Q15027 740 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 CCDC142Q17RM4 750 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 NOMO2Q5JPE7 1267 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 FAM102AQ5T9C2 384 aaPredicted RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 TRMT10CQ7L0Y3 403 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 B3GALNT2Q8NCR0 500 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 TNIP3Q96KP6 325 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ZNF558Q96NG5 402 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 DDX43Q9NXZ2 648 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 ZNF148Q9UQR1 794 aa17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 DRG1Q9Y295 367 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-204ENST00000547687 PIK3R2O00459 728 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 RNF8O76064 485 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 DDHD2O94830 711 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 KLRC2P26717 231 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 BRCC3P46736 316 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 RGS7P49802 495 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 BCAR1P56945 870 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 DLX2Q07687 328 aaPredicted RBP17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 SMTNL2Q2TAL5 461 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 PLPP4Q5VZY2 271 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 OR6B2Q6IFH4 312 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 PMF1Q6P1K2 205 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 LMAN2LQ9H0V9 348 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 NRDE2Q9H7Z3 1164 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 ASNSD1Q9NWL6 643 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 CWC15Q9P013 229 aaKnown RBP17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 E5RJQ4 531 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 F8W810 466 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 CHKAP35790 457 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 MDH1P40925 334 aaKnown RBP17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 CDR1P51861 262 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 MAGOHP61326 146 aaKnown RBP17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 GUCY1A3Q02108 690 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 KCNT1Q5JUK3 1230 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 UBAP2Q5T6F2 1119 aaKnown RBP17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 KIAA0319Q5VV43 1072 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 CROCCP2Q86T23 111 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 TMEM86AQ8N2M4 240 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 SLC2A14Q8TDB8 520 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 ADAMTS19Q8TE59 1207 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 BCL7CQ8WUZ0 217 aaPredicted RBP17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 SLC35F5Q8WV83 523 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 UROC1Q96N76 676 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 TLR9Q9NR96 1032 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 PCSK1NQ9UHG2 260 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 EFR3BQ9Y2G0 817 aa17.25■□□□□ 0.35
CHMP1A-204ENST00000547687 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.24■□□□□ 0.35
CHMP1A-204ENST00000547687 BMP1P13497 986 aa17.24■□□□□ 0.35
CHMP1A-204ENST00000547687 PTPN1P18031 435 aaKnown RBP17.24■□□□□ 0.35
CHMP1A-204ENST00000547687 KDELR1P24390 212 aa17.24■□□□□ 0.35
CHMP1A-204ENST00000547687 TKTP29401 623 aaKnown RBP17.24■□□□□ 0.35
CHMP1A-204ENST00000547687 MIPP30301 263 aa17.24■□□□□ 0.35
CHMP1A-204ENST00000547687 NRIP1P48552 1158 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms