RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 TMA16Q96EY4 203 aaKnown RBP15.2■□□□□ 0.02
HOXC11-202ENST00000546378 MPP4Q96JB8 637 aa15.2■□□□□ 0.02
HOXC11-202ENST00000546378 LGALS13Q9UHV8 139 aa15.2■□□□□ 0.02
HOXC11-202ENST00000546378 MFHAS1Q9Y4C4 1052 aa15.2■□□□□ 0.02
HOXC11-202ENST00000546378 LRRC42Q9Y546 428 aa15.2■□□□□ 0.02
HOXC11-202ENST00000546378 SNCAIPQ9Y6H5 919 aa15.2■□□□□ 0.02
HOXC11-202ENST00000546378 HCRTO43612 131 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 ATP9BO43861 1147 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PRPSAP2O60256 369 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 TPST1O60507 370 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 KRT37O76014 449 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 CXCL8P10145 99 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 MAPTP10636 758 aaKnown RBP15.19■□□□□ 0.02
HOXC11-202ENST00000546378 RAG1P15918 1043 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PRAMEP78395 509 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 MRPS22P82650 360 aaKnown RBP15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PDE1CQ14123 709 aaPredicted RBP15.19■□□□□ 0.02
HOXC11-202ENST00000546378 CWF19L1Q69YN2 538 aaKnown RBP15.19■□□□□ 0.02
HOXC11-202ENST00000546378 ARHGAP24Q8N264 748 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 INPP5DQ92835 1189 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 CAB39LQ9H9S4 337 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PTPRHQ9HD43 1115 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PDGFRBP09619 1106 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 CSH1P0DML2 217 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 CSH2P0DML3 217 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 ADORA2AP29274 412 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 IFRD2Q12894 506 aaPredicted RBP15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PARP6Q2NL67 630 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 ZACNQ401N2 412 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 RNF135Q8IUD6 432 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 TRIM11Q96F44 468 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 WDR55Q9H6Y2 383 aaPredicted RBP15.19■□□□□ 0.02
HOXC11-202ENST00000546378 TMPRSS4Q9NRS4 437 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PCDHGB4Q9UN71 923 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 PCDHGB5Q9Y5G0 923 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 TMEM191CA6NGB0 347 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 CREB3O43889 395 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 NME5P56597 212 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 MED21Q13503 144 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 WASHC2DQ5SRD0 308 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 EGFL6Q8IUX8 553 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 GDPD5Q8WTR4 605 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 ANGPTL2Q9UKU9 493 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 USP18Q9UMW8 372 aa15.19■□□□□ 0.02
HOXC11-202ENST00000546378 GOLGA4Q13439 2230 aaKnown RBP15.19■□□□□ 0.02
HOXC11-202ENST00000546378 WDR27A2RRH5 827 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 SPDYE16A6NNV3 312 aaPredicted RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 STX16-NPEPL1H3BU86 382 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 EXTL3O43909 919 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 PDK1Q15118 436 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 SFT2D3Q587I9 215 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 BANPQ8N9N5 519 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 DCAKDQ8WVC6 231 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 TBC1D22BQ9NU19 505 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 APOBEC2Q9Y235 224 aaKnown RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 ZNF711Q9Y462 761 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 C19orf81C9J6K1 198 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 ERVK-10P10266 1014 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 CDC16Q13042 620 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 DLG2Q15700 870 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 ZNF568Q3ZCX4 644 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 FASTKD1Q53R41 847 aaKnown RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 GJC2Q5T442 439 aaPredicted RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 SYDE1Q6ZW31 735 aaPredicted RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 TMPRSS6Q8IU80 811 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 TWNKQ96RR1 684 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 KLHL4Q9C0H6 718 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 HOXC10Q9NYD6 342 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 AFG3L2Q9Y4W6 797 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 V9GYQ6 96 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 MAGEA13PA6NCF6 341 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 P4HA2O15460 535 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 ITGB3P05106 788 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 TPH1P17752 444 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 KDELR1P24390 212 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 RPL10P27635 214 aaKnown RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 CLCN3P51790 818 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 GCNT1Q02742 428 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 N4BP2L1Q5TBK1 243 aaPredicted RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 SLC10A4Q96EP9 437 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 SCYL1Q96KG9 808 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 NDNQ99608 321 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 TEX13BQ9BXU2 312 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 PHACTR1Q9C0D0 580 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 PCDH9Q9HC56 1237 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 CYTH4Q9UIA0 394 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 SYNPO2Q9UMS6 1093 aa15.18■□□□□ 0.02
HOXC11-202ENST00000546378 MTO1Q9Y2Z2 717 aaKnown RBP15.18■□□□□ 0.02
HOXC11-202ENST00000546378 COL2A1P02458 1487 aaPredicted RBP15.17■□□□□ 0.02
HOXC11-202ENST00000546378 MYH9P35579 1960 aaKnown RBP15.17■□□□□ 0.02
HOXC11-202ENST00000546378 DLDP09622 509 aaKnown RBP15.17■□□□□ 0.02
HOXC11-202ENST00000546378 LCP1P13796 627 aa15.17■□□□□ 0.02
HOXC11-202ENST00000546378 ARSAP15289 507 aa15.17■□□□□ 0.02
HOXC11-202ENST00000546378 NUDT2P50583 147 aa15.17■□□□□ 0.02
HOXC11-202ENST00000546378 AP1B1Q10567 949 aa15.17■□□□□ 0.02
HOXC11-202ENST00000546378 ANO4Q32M45 955 aa15.17■□□□□ 0.02
HOXC11-202ENST00000546378 CES4AQ5XG92 561 aa15.17■□□□□ 0.02
HOXC11-202ENST00000546378 CCNYL1Q8N7R7 359 aa15.17■□□□□ 0.02
HOXC11-202ENST00000546378 DIS3LQ8TF46 1054 aaKnown RBP15.17■□□□□ 0.02
HOXC11-202ENST00000546378 PRPF18Q99633 342 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms