RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NGRNQ9NPE2 291 aaKnown RBP8.06□□□□□ -1.12
VPS13D-211ENST00000543710 DMAP1Q9NPF5 467 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-211ENST00000543710 FAM217BQ9NTX9 383 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-211ENST00000543710 ZMYM5Q9UJ78 669 aa8.06□□□□□ -1.12
VPS13D-211ENST00000543710 MFHAS1Q9Y4C4 1052 aa8.06□□□□□ -1.12
VPS13D-211ENST00000543710 PDZK1P1A8MUH7 402 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 KPNA4O00629 521 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SRGAP2O75044 1071 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PAEPP09466 180 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ITGA8P53708 1063 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 KDELC2Q7Z4H8 507 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 REXO1L1PQ8IX06 675 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 WDR60Q8WVS4 1066 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ZIM3Q96PE6 472 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 C17orf80Q9BSJ5 609 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 AGXT2Q9BYV1 514 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SPATA6Q9NWH7 488 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SPG21Q9NZD8 308 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 H2AFY2Q9P0M6 372 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 TRPV2Q9Y5S1 764 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 FAM95CA0A1B0GW59 222 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 EVPLLA8MZ36 301 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 FSBPO95073 299 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 KCNA2P16389 499 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CYP2C18P33260 490 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 HARS2P49590 506 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ALDH18A1P54886 795 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CACNB1Q02641 598 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 TFDP3Q5H9I0 405 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SWSAP1Q6NVH7 229 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 LLGL2Q6P1M3 1020 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 NET1Q7Z628 596 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 LZTR1Q8N653 840 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 TUBGCP3Q96CW5 907 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CLMNQ96JQ2 1002 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 DHX35Q9H5Z1 703 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 DTNAQ9Y4J8 743 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 GPR75-ASB3A0A0A6YYF3 556 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 WDR91A4D1P6 747 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PRR23AA6NEV1 266 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 AP1G2O75843 785 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 WDR47O94967 919 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ENO1P06733 434 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CTSEP14091 401 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 OGNP20774 298 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 HSD17B3P37058 310 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 MAGEA10P43363 369 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ARHGEF7Q14155 803 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 GPR158Q5T848 1215 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 MRNIPQ6NTE8 343 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 BNC2Q6ZN30 1099 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PRPF39Q86UA1 669 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CENPLQ8N0S6 344 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 MAGEC3Q8TD91 643 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 FAM84BQ96KN1 310 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 TINF2Q9BSI4 451 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 DDX47Q9H0S4 455 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SMYD3Q9H7B4 428 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 NOD2Q9HC29 1040 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 AASDHPPTQ9NRN7 309 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 COMMD8Q9NX08 183 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ABI3Q9P2A4 366 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 RSL24D1Q9UHA3 163 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 TBX20Q9UMR3 447 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 DAGLAQ9Y4D2 1042 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SPACA6W5XKT8 324 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PIK3CDO00329 1044 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ERN1O75460 977 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ARIH2O95376 493 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 GYPCP04921 128 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PDGFRBP09619 1106 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 FGFR4P22455 802 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ACAT1P24752 427 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SREBF1P36956 1147 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 LHX1P48742 406 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CCR3P51677 355 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ITGA1P56199 1179 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PTENP60484 403 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 GRSF1Q12849 480 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SLC12A1Q13621 1099 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ZC3H12BQ5HYM0 836 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PPP1R15BQ5SWA1 713 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ATF7IP2Q5U623 682 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 RNF43Q68DV7 783 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 POTEGQ6S5H5 508 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 KIAA1324Q6UXG2 1013 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 KRT73Q86Y46 540 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 GLYCTKQ8IVS8 523 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SPIRE2Q8WWL2 714 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 NUSAP1Q9BXS6 441 aaKnown RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 ZDHHC4Q9NPG8 344 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 PLAGL2Q9UPG8 496 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 AKAP12Q02952 1782 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CCINQ13939 588 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 GSTA3Q16772 222 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 GOLGA7BQ2TAP0 167 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 TMEM119Q4V9L6 283 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CRELD2Q6UXH1 353 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 IKBIPQ70UQ0 350 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms