RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 QPCTQ16769 361 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 RARS2Q5T160 578 aaKnown RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 DAB2IPQ5VWQ8 1189 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 ZNF410Q86VK4 478 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 CDKL3Q8IVW4 592 aaPredicted RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 CNPY4Q8N129 248 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 RIBC1Q8N443 379 aaPredicted RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 SLC25A41Q8N5S1 370 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 OLIG1Q8TAK6 271 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 DNAJB3Q8WWF6 145 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 EMID1Q96A84 441 aaPredicted RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 PAFAH2Q99487 392 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 ASB7Q9H672 318 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 C10orf88Q9H8K7 445 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 DPP3Q9NY33 737 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 RBM47A0AV96 593 aaKnown RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 MOCS2O96007 188 aaPredicted RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 ZSCAN5DPP0CG00 497 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 SETSIPP0DME0 302 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 ELF3P78545 371 aaPredicted RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 CDC42EP1Q00587 391 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 SLC20A2Q08357 652 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 DNAL1Q4LDG9 190 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 PRUNE1Q86TP1 453 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 CDC26Q8NHZ8 85 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 AGAP11Q8TF27 550 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 RNF139Q8WU17 664 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 ING2Q9H160 280 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 TSR3Q9UJK0 312 aaKnown RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 AGPSO00116 658 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 TULP2O00295 520 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 HNRNPCP07910 306 aaKnown RBP eCLIP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 EEF1DP29692 281 aaKnown RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 BMPR2Q13873 1038 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 EFTUD2Q15029 972 aaKnown RBP eCLIP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 PKN2Q16513 984 aaKnown RBP10.34□□□□□ -0.75
TRAF1-202ENST00000540010 GLRA4Q5JXX5 417 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 DCAF12L1Q5VU92 463 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 NOTUMQ6P988 496 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 LAYNQ6UX15 382 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 PGM2Q96G03 612 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 CCDC90BQ9GZT6 254 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 FAM96AQ9H5X1 160 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 DCLRE1BQ9H816 532 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 SNTG2Q9NY99 539 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 PCDHA3Q9Y5H8 950 aa10.34□□□□□ -0.75
TRAF1-202ENST00000540010 NRCAMQ92823 1304 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 TSPAN1O60635 241 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 BGNP21810 368 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 PSEN2P49810 448 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 DEUP1Q05D60 604 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 C1QBPQ07021 282 aaKnown RBP10.33□□□□□ -0.76
TRAF1-202ENST00000540010 SCARA3Q6AZY7 606 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 TWF2Q6IBS0 349 aaKnown RBP10.33□□□□□ -0.76
TRAF1-202ENST00000540010 LRRC8EQ6NSJ5 796 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 C1orf127Q8N9H9 656 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 USP33Q8TEY7 942 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 EME1Q96AY2 570 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 SGF29Q96ES7 293 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 OLFM3Q96PB7 478 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 NFKBIZQ9BYH8 718 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 PTPRHQ9HD43 1115 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 ARMCX1Q9P291 453 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 STAP1Q9ULZ2 295 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 SNX3O60493 162 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 MTA2O94776 668 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 PROSCO94903 275 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 GNAT1P11488 350 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 PECAM1P16284 738 aaPredicted RBP10.33□□□□□ -0.76
TRAF1-202ENST00000540010 SERPINB3P29508 390 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 DYNC1I2Q13409 638 aaKnown RBP10.33□□□□□ -0.76
TRAF1-202ENST00000540010 DCAF4L1Q3SXM0 396 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 RASAL3Q86YV0 1011 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 C15orf41Q9Y2V0 281 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 NR2E1Q9Y466 385 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 DCDC2CA8MYV0 355 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 GSTA4O15217 222 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 BNIP3LO60238 219 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 CYP1A1P04798 512 aaPredicted RBP10.33□□□□□ -0.76
TRAF1-202ENST00000540010 PYGBP11216 843 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 PROZP22891 400 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 GNASQ5JWF2 1037 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 ERMARDQ5T6L9 678 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 ISLR2Q6UXK2 745 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 BEST2Q8NFU1 509 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 KCNN1Q92952 543 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 VCPIP1Q96JH7 1222 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 KATNAL1Q9BW62 490 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 RSAD1Q9HA92 442 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 RNF19AQ9NV58 838 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 GPATCH2LQ9NWQ4 482 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 HES2Q9Y543 173 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 MROH7Q68CQ1 1323 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 LCTP09848 1927 aa10.33□□□□□ -0.76
TRAF1-202ENST00000540010 LSM8O95777 96 aaKnown RBP10.32□□□□□ -0.76
TRAF1-202ENST00000540010 TAC1P20366 129 aa10.32□□□□□ -0.76
TRAF1-202ENST00000540010 YY1P25490 414 aa10.32□□□□□ -0.76
TRAF1-202ENST00000540010 AQP5P55064 265 aa10.32□□□□□ -0.76
TRAF1-202ENST00000540010 NSUN2Q08J23 767 aaKnown RBP eCLIP10.32□□□□□ -0.76
TRAF1-202ENST00000540010 SREBF2Q12772 1141 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms