RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 EIF4A1P60842 406 aaKnown RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 FHL3Q13643 280 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 KPNB1Q14974 876 aaKnown RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 PPP2R5AQ15172 486 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 ST3GAL2Q16842 350 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 MANEALQ5VSG8 457 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 GRHL2Q6ISB3 625 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 FAM71DQ8N9W8 422 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 NGDNQ8NEJ9 315 aaKnown RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 SMCR8Q8TEV9 937 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 WIPF2Q8TF74 440 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 VPS50Q96JG6 964 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 SELENOOQ9BVL4 669 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 POT1Q9NUX5 634 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 MAFFQ9ULX9 164 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 CAPN11Q9UMQ6 739 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 IGKV2D-30A0A075B6S6 120 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 RRHO14718 337 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 SNX2O60749 519 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 YY1P25490 414 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 PEX2P28328 305 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 RBL1P28749 1068 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 TACR3P29371 465 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 CCKARP32238 428 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 ME1P48163 572 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 TXNL4AP83876 142 aaKnown RBP4.22□□□□□ -1.73
VPS13A-213ENST00000539950 KIAA0753Q2KHM9 967 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 SLC9C1Q4G0N8 1177 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 UBE2Q1Q7Z7E8 422 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 ANKRD13AQ8IZ07 590 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 ARFGAP1Q8N6T3 406 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 ZFYVE19Q96K21 471 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 MSLNLQ96KJ4 702 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 TM2D2Q9BX73 214 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 MLXIPLQ9NP71 852 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 VPS45Q9NRW7 570 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 SEMA5BQ9P283 1151 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 HPSEQ9Y251 543 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 LRP12Q9Y561 859 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 HS3ST3B1Q9Y662 390 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 EID1Q9Y6B2 187 aa4.22□□□□□ -1.73
VPS13A-213ENST00000539950 CCDC187A0A096LP49 1063 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 C16orf96A6NNT2 1141 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 F8W8V4 182 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 H3BNX3 289 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 GOLIM4O00461 696 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 INPPL1O15357 1258 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 INMTO95050 263 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 TOMM40O96008 361 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 CRYABP02511 175 aaKnown RBP4.21□□□□□ -1.74
VPS13A-213ENST00000539950 MT-ND5P03915 603 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 ALPLP05186 524 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 TMEM225BP0DP42 221 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 GALNSP34059 522 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 CPA2P48052 419 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 HSF1Q00613 529 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 MTX1Q13505 466 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 STIM1Q13586 685 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 GRM3Q14832 879 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 CLCA4Q14CN2 919 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 PFKFB3Q16875 520 aaPredicted RBP4.21□□□□□ -1.74
VPS13A-213ENST00000539950 CHST15Q7LFX5 561 aaPredicted RBP4.21□□□□□ -1.74
VPS13A-213ENST00000539950 TFAP2DQ7Z6R9 452 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 ADAMTS15Q8TE58 950 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 ZDHHC12Q96GR4 267 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 SNX22Q96L94 193 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 SCNM1Q9BWG6 230 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 ADGRE3Q9BY15 652 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 KRTAP2-2Q9BYT5 123 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 NUAK2Q9H093 628 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 SAP30LQ9HAJ7 183 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 ZBTB40Q9NUA8 1239 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 TBC1D23Q9NUY8 699 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 ZNF212Q9UDV6 495 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 SQORQ9Y6N5 450 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 COL15A1P39059 1388 aa4.21□□□□□ -1.74
VPS13A-213ENST00000539950 C2CD4BA6NLJ0 364 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 VSTM5A8MXK1 200 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 MGEA5O60502 916 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 OAZ2O95190 189 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 ZBED1O96006 694 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 PLAUP00749 431 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 HRGP04196 525 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 TMIGD3P0DMS9 266 aaPredicted RBP4.2□□□□□ -1.74
VPS13A-213ENST00000539950 TNFRSF1BP20333 461 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 NANOS2P60321 138 aaKnown RBP4.2□□□□□ -1.74
VPS13A-213ENST00000539950 WDR5P61964 334 aaKnown RBP4.2□□□□□ -1.74
VPS13A-213ENST00000539950 CCDC15Q0P6D6 951 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 MTAPQ13126 283 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 DNASE1L3Q13609 305 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 GALEQ14376 348 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 FAM110CQ1W6H9 321 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 EARS2Q5JPH6 523 aaKnown RBP4.2□□□□□ -1.74
VPS13A-213ENST00000539950 MZT2AQ6P582 158 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 DARS2Q6PI48 645 aaKnown RBP4.2□□□□□ -1.74
VPS13A-213ENST00000539950 C9orf47Q6ZRZ4 202 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 COLCA1Q6ZS62 124 aa4.2□□□□□ -1.74
VPS13A-213ENST00000539950 MEPCEQ7L2J0 689 aaKnown RBP4.2□□□□□ -1.74
VPS13A-213ENST00000539950 SRGAP1Q7Z6B7 1085 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms